Protein Info for mRNA_4772 in Rhodosporidium toruloides IFO0880

Name: 13140
Annotation: K01874 MARS, metG methionyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 707 transmembrane" amino acids 531 to 552 (22 residues), see Phobius details PF09334: tRNA-synt_1g" amino acids 43 to 438 (396 residues), 487.7 bits, see alignment E=3.5e-150 TIGR00398: methionine--tRNA ligase" amino acids 44 to 595 (552 residues), 545.8 bits, see alignment E=5.7e-168 PF00458: WHEP-TRS" amino acids 655 to 699 (45 residues), 28.7 bits, see alignment 1.8e-10

Best Hits

Predicted SEED Role

"Methionyl-tRNA synthetase (EC 6.1.1.10)" (EC 6.1.1.10)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.10

Use Curated BLAST to search for 6.1.1.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (707 amino acids)

>mRNA_4772 K01874 MARS, metG methionyl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MASPYPAAAAESSTRKIRPGVELKDYRDDTGKTLPKKDGVPNVLITSALPYVNNQPHLGN
IIGSTLSADVFARYSRQRNHRVLYICGTDEYGTTTEVMAAKEGLSPQALCDKYHKLHADS
YQWFEIGFDHFGRTSTPKQTEICQDIFLKLYKNGWLEEHENKQLYCEKDKRFLADRYVEG
TCPKCNYDGARGDQCENCSVTYESPLELVNPRCSACGTTPDARLTAHLHIKLAELQPQIE
EFVKKSSSTGTWSANGKAFTDGWLRGGLQSRGMTRDLEWGVKLPKELGPKWENKVMYVWF
DAPIGYPSITANYTDEWQQWWRNPEDVTLYQFMGKDNVPFHTVLFPGYLLGTSDKWTMLN
SISTTEYLQYEGTKFSKSKNVGVFGQNARETGVPPSVWRYYLLMNRPETNDSEFNWDDFI
TRNNSELLNNFGNYANRVIKFAIAKYGSVIPDPKNGAFDYAAGSPYPFADEDKAFVDEIN
TLLATYVDQLDHQKLRGGLMTLMHISARGNQFIQDNRLDNTLLENNPSRAAEVVLLALNL
IYVIAALSHPYMPSTSDSILSQLNAVPRAIPDSFSIDLFPGHKLGEAKHLFTRIDPKMAA
VWRAQYGGEAAKAAIAAASEQKLSKKQQDKLKKAAQKAAAEAEAARPKTEEERALEEQIK
AQGDKVRRIKQGQAEEGDRAVEDEVAALKALKEELAALAKSLADVQL