Protein Info for mRNA_4773 in Rhodosporidium toruloides IFO0880

Name: 13141
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 92 to 109 (18 residues), see Phobius details amino acids 116 to 140 (25 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details amino acids 308 to 330 (23 residues), see Phobius details amino acids 338 to 358 (21 residues), see Phobius details amino acids 368 to 391 (24 residues), see Phobius details amino acids 399 to 423 (25 residues), see Phobius details amino acids 435 to 454 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 12 to 465 (454 residues), 299.6 bits, see alignment E=2e-93 PF00083: Sugar_tr" amino acids 22 to 469 (448 residues), 329.1 bits, see alignment E=4.9e-102 PF07690: MFS_1" amino acids 57 to 415 (359 residues), 61.4 bits, see alignment E=7.7e-21

Best Hits

KEGG orthology group: None (inferred from 40% identity to pic:PICST_33971)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>mRNA_4773 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MKYWDEPVTNTLQGRPLLAALTVCCAIGFLLFGYDQGVMGGLIGGADFLETFPALANNST
LLGATVAIYEIGALIGSIFASVYGERLGRRRAMILGCVFALTGGAIQGGSDGPNALAILI
FFRVWTGLGIGMLTSLLPAFHAECSPAKYRGSIVLLDLVACACGLTLSFWLSFATSYISG
GAQWRFPLSFQAVFPLIVLIVVAFLPDSPRWLAQQGRTDEARAVLLRYNGPEEAAAVYAE
IETAIAIEREAGVTRWSDAFRPGPQALRYRTFLGMGALFAQQCTGVNVISYYSTEIFTKS
VGLSRNLSLILSGVNGINSLCFVILGTFLIDRVGRVRLMWTTAAMQAVMFAVMAGVLADG
NPSYGEGVTGACMLFLFFASFSVGWLGPSWLYPSEVTPLATRAIAASLSSASNWIWNFVV
VTVSPPALDGIKGKYYIVFAILNALLVPMLYFFYPETARLSLEEIDALFANGNVQMRRSP
RSPVEGFVAPVAKHVVDSDKVMRGEEEQIEKV