Protein Info for mRNA_4780 in Rhodosporidium toruloides IFO0880

Name: 13148
Annotation: SUPERFAMILY--SSF52047

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1064 transmembrane" amino acids 50 to 70 (21 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 1013 to 1036 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1064 amino acids)

>mRNA_4780 SUPERFAMILY--SSF52047 (Rhodosporidium toruloides IFO0880)
MRSTSSSVPEHRGVASLCQGGVAIGHLGVATVQCCGQCSVQLSIPHTAPAVVLLVPLVRS
FAFPSFLLALTPMLDLHTIATMPGSGGLGLSLAQPVIVVQPKRIRIKQEDGYLVGTQDGR
QARRTLESLSDELLTRIFWHVYISYMAQNLDDRRLAEIEKVDTFIPSGIIAPLGYTTLNK
RIYRLTYGLWMSTMTINEDDVAQDRIMTGILIRSLAPGWPTTQYITEFNGYLSSSSPQLQ
CTTFMSLRNLRRLIITFWSSANTSEPLPPAFLAVLPSFRHLEYLRLREFDGISEGSPVLR
LDQHLSSLQTLEIDGKGIPVEWHGSLGNLKHLTMRYKSRNEVAAHLGTGIPWTTLESLVV
DVKDLWTLKLLEVEVMTASMLEILPLKHLEINVPSVRKADFGKLKNTFESLFLNLCKTRL
SSMHISHFDRLPAEMSFVLCGVKTLTIDTSEPVVDEDRAARLAVFVRCFPDVQVVRIAYT
NWIDHPRSLEDFVFFDDDEDKLGFDDDHTAESMSLLPSHEFAFAYPHWLSFLFELLWTEV
REVRYRARLETVEMRWTREGARGPLEAEKWHVGTRPARSRSPLTLLHLAHLLTSPLAGSL
NFTTCFTTFEMSTNLTAPTDEPFSCPSNRLSRLVATAPRSLSSLPTEILQNIFTQLHHLT
RVPRLATKGFRIELRYTQLDKCIFGIAKPIWMSLFILPPDAIEPTGKLVQDPVLAAFLDH
TDCAAGVREAVIRLERNTFSLACLAVSKLSHLTTLDIDSWSEEAPDSATSLVVALKRLTS
LRSLRLGVVPWDAPWDQLRLDRDLPLLRDLDVVDEKLFEALAPGFSRLTRLTIGHFAMGR
NHVPWRTLRYLEINPEEEAFEPAQFIDSLTSYMCEPANPALPLEGLVFTFPTLRQADEVE
TDEAEFCQADLYHIFRNLRLSSLRSLSLSHIDSFKWTQPNFLLPSVTLLHLGGTCDFTSK
EEFDHFLAFVHSFPMLQELRLSQFGIFTQAVTDPTPTSLTADAISRLSSRQLASIASTLV
ILLFSLQSTTVTKFVYRENGHDSKEMRWQREPGGAFKGELWSWG