Protein Info for mRNA_4789 in Rhodosporidium toruloides IFO0880

Name: 13157
Annotation: K18402 PHF20 PHD finger protein 20

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 702 PF00628: PHD" amino acids 102 to 151 (50 residues), 31.7 bits, see alignment 5.8e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (702 amino acids)

>mRNA_4789 K18402 PHF20 PHD finger protein 20 (Rhodosporidium toruloides IFO0880)
MSPPATSSKKGGRGGSAAGKKGAKGSSSSGRGTGKRSASAALAEDDYSGGSKRAKRSTSG
RKSLREEELGVGAELEDDIEAEGGEEDGEEAEDEDGDGGVTRCVCGQDNEEMASGLMIQC
DTCKCWQHGACVGLWDEKECPNRYFCELCKPSLHGPGGLLRKVSRKSSAPAAGRSGSPTS
TRDTSGKGHKPRESADAAMVHAFLHDHNADHKPASTAFPSSNSSAPKKRNTMNSRDAAYD
DAIALSILEHGTAAMRAKLEKARNGELSGSEEEGSGDEEDEVEEIIISGAGGRGKGKKPV
GAKAGTKSKVVVTGKKGAKGKSGPRNRRSPSTAEDESPAPDGDDEDIEPKEEAVDADDGE
LAGQGHDADAEAEGAEAERDDAKRRQSVSQERRDEDEHDEEKAKEDAEHDAGESSMALDE
KADEEVAEAEASPEPSPIPVHTGGRGKHPNQYTYRGRGGHGAHGRGGKSPIKRGGASHAS
FSSHGNGEASGSTGKNGSGAATSSGAFGWGLPEHLRHLAPLLPSQSPQLLEVPSVADPTA
PPTLEPPTKVRFPGKRVTMPEMRKRARTVLDFVTKVQVEMSERDKRWEVLRDANERIKEA
REKERSEKAGSSSGGASTSGSAAGSGSRSSSAIGTPRGVGGTTPVPSSSIAVDFTLAALP
PLPGASSAPLLTSAASPTSLAMMDRLAKEVIRFQERFFGVVE