Protein Info for mRNA_4793 in Rhodosporidium toruloides IFO0880
Name: 13161
Annotation: HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 61% identical to CCPR_MAGO7: Cytochrome c peroxidase, mitochondrial (CCP1) from Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
KEGG orthology group: K00428, cytochrome c peroxidase [EC: 1.11.1.5] (inferred from 62% identity to act:ACLA_048480)Predicted SEED Role
"Ascorbate peroxidase (EC 1.11.1.11)" (EC 1.11.1.11)
MetaCyc Pathways
- ascorbate glutathione cycle (2/4 steps found)
- L-ascorbate degradation III (3/6 steps found)
- ascorbate recycling (cytosolic) (2/6 steps found)
- L-ascorbate degradation II (bacterial, aerobic) (2/7 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.11.1.11
Use Curated BLAST to search for 1.11.1.11 or 1.11.1.5
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (364 amino acids)
>mRNA_4793 HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113 (Rhodosporidium toruloides IFO0880) MAFASVLRTATPRLAVRAAPQLARASARRAFASEASSAPKGNSGGSNNGLLFGLLGAGAL GGGLYLYTRDSSDNRNVKDAASPQQVDYQKVYNAIADILEDEKYDDGSYGPVLVRLAWHA SGTYDKETGNGGSNGATMRFAPEANHGANAGLEHARNRLEIVKKKFPEITYSDLWTLAGV CAIQEMGGPYITWRAGRKDGNVENCTPDGRLPDGDKGADHVRKIFYRMGFNDQEIVALSG AHALGRCHVDRSGFDGPWQYAPTTFSNEYFRLLEDEKWQERKWKGPPQFENKSDKSLMML RTDMALMTDKGFRQYTDKYAKDENAFFSDFSKAFSKLIHLGVPTAQLSEPVPLKKIEDQA PASA