Protein Info for mRNA_4802 in Rhodosporidium toruloides IFO0880

Name: 13170
Annotation: K09313 CUTL homeobox protein cut-like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 transmembrane" amino acids 648 to 667 (20 residues), see Phobius details PF08172: CASP_C" amino acids 439 to 669 (231 residues), 243.8 bits, see alignment E=9.8e-77

Best Hits

KEGG orthology group: K09313, homeobox protein cut-like (inferred from 57% identity to scm:SCHCODRAFT_77454)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (682 amino acids)

>mRNA_4802 K09313 CUTL homeobox protein cut-like (Rhodosporidium toruloides IFO0880)
MADAQASSSFASALTAWKDIKLHDLQRTMDAQGLEIVEGQKDSLVGRKKLAEQTREFKKV
PDEEKGPVFKTLLKAYQTEIDNLTRRSKVAENAFLSVYKLLAEAPDPFPLLDAAVDQTAR
ASEAKVLEMELARSKDEIASLKQQLVESQSVEKEKKKLADKVERLEAKMEDMIHDRVSSK
EAELHATYDERLRNYEEREKDLQRQVTVARSQLRELRTTADTNQARLFDHSQRQDQETVA
RLAEADLVAQDLERANARVAEVERRNEKLRAEIEAVRSGTETASRVGALEAQVSDLQTEA
TRLIRSLDSQKEAFESERSDLQKKVEQLEKDQAVKAQEIETLGEKVKQYADYDEIKRELE
IMKYVEFAGMDLDDVPGESGDSVADLIRLPDPNADKANQHRGKPLENLLMAKNRKLQDKV
TSLRVAHDELVSAHEGVLGEFEQLQARCEEQKQLVDRLENDLVRINESRAGGGAAGQGGP
DAHAREDPLAGLQLGKKTQDAPPVQPHPFQSSAETSILPIITSQRDRFRQRNGELEEELR
RQFNTITELRGEIKTLQTDNLKLYEKVRYLQSYRDEGMAARQQAGFSNVVRGDEELGKYH
NKYEESMNPFEAFKGRERGRAIHGLNPLEKVLLSLSTVVLSNRITRNLFVLYAFGLHFFV
LSTLYHYTQSADKALPVVQPPI