Protein Info for mRNA_4804 in Rhodosporidium toruloides IFO0880

Name: 13172
Annotation: HMMPfam-PAP2 superfamily-PF01569

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 82 to 100 (19 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details amino acids 240 to 257 (18 residues), see Phobius details amino acids 263 to 282 (20 residues), see Phobius details PF14378: PAP2_3" amino acids 111 to 281 (171 residues), 63.9 bits, see alignment E=1.7e-21 PF01569: PAP2" amino acids 142 to 286 (145 residues), 35.6 bits, see alignment E=7.9e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>mRNA_4804 HMMPfam-PAP2 superfamily-PF01569 (Rhodosporidium toruloides IFO0880)
MGRDHTVGAFPPFLWTFLFKQAKHIPSDIRPPIHIDLLPRLNRLLLAPAGTLLVTLSLLP
LARLVYHWSDGDKKGEERGRGRAYAASILAFPTLLWLSAKLGEAEVSNHLDLLAFGSYGA
LHFASPIIAGWWIWGFGSQGAACTFGWTLGAQNLAGLATHLVFPNAAPWFYDVYGIDAAQ
PDYSYPGNPAGLIRVDTILGTHIYTKAFGHGPVVFGAIPSLHAATSICCGLFVTRYSRGY
RGLAFMVFYCFWMFWSTQYLHHHFAIDLLCGTFYSLLSFTLFERTRLRALDRRHYSLGLT
NGYERLFYARRDGENWDEYGERMLRRLGGDEGGKEGALALSRSSSGGSVGRVPMGRPGGY
EAVPEAAEEEGRTVFALRDGEEDEEADDRPRYGSPSRFATPNRSVASLA