Protein Info for mRNA_4808 in Rhodosporidium toruloides IFO0880

Name: 13176
Annotation: K12880 THOC3 THO complex subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF00400: WD40" amino acids 59 to 96 (38 residues), 19.2 bits, see alignment 2.8e-07

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (304 amino acids)

>mRNA_4808 K12880 THOC3 THO complex subunit 3 (Rhodosporidium toruloides IFO0880)
MVNAPTTSEDFSRFSLRRLGVTRERVRTVAWNLDGRRLAAGGSPSLRIFLPDKDTRTSTE
CRGHTGEVSCVRWSPVHPERLASVSSGDDKALHFWDIRQGSKPTSTIETYGNNIHMNWSP
DGKTIVVGTTKDRLMWVDVEEQRVVNRIDMDKETNDTQFSHNGSLLYTGVEGSVRISAFP
SNELVYTVPMTSMPVGMLDLDPRGRYLLAGGNDATVSLWETEEWTCAASAGHHDGPLLTC
RFNHDGSLVASIATGDVVISSVPGLKKEHSIPFADGASQDLAWHPSRNVLAYAGNEVCIW
GYGV