Protein Info for mRNA_4810 in Rhodosporidium toruloides IFO0880

Name: 13178
Annotation: KOG1304 Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 97 to 118 (22 residues), see Phobius details amino acids 130 to 151 (22 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 212 to 235 (24 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 297 to 318 (22 residues), see Phobius details amino acids 324 to 350 (27 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details PF01490: Aa_trans" amino acids 2 to 388 (387 residues), 114.1 bits, see alignment E=7.1e-37 PF13520: AA_permease_2" amino acids 25 to 252 (228 residues), 29.5 bits, see alignment E=3.6e-11

Best Hits

KEGG orthology group: None (inferred from 56% identity to fgr:FG03778.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>mRNA_4810 KOG1304 Amino acid transporters (Rhodosporidium toruloides IFO0880)
MKTQIGLGVLNIPDVFHTLGLAPGVIILVVIAVLTTWTDYYIGIFKLKHPTVYSVSDCGA
LMFGRVGREIFGVGYWLLMTCIVGSALLGLSTALNAISLHGTCTAVFVVVAAVATYPLAS
LRTLGGIKWVGWVGLASMIVSILTVTIAVGAGGRPSLAPQEGPMDLNIVIWGHPSFADAM
NAIGNLVFAYAGTAAFLPIACEMRNTRDYGKAVITCQTFVTVFYIVIGVVVYCYAGQYVA
SPALGTAGVLLKRISYGLALPGLLAAAVIYTHLPAKWLFVRFLRNSHHLTHSTPTHWIVW
LSCTLGCLVFSYIIASAIPVFGGLVGLVGALFGTMFSLQAVSIMWFFDYWPRFKMTEKRT
KWFWFLVAVNAFIIVGGTFIMVGGTYGSVISIRDSYAASGGTPWSCADNSNSS