Protein Info for mRNA_4833 in Rhodosporidium toruloides IFO0880

Name: 13201
Annotation: K05755 ARPC4 actin related protein 2/3 complex, subunit 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 169 PF05856: ARPC4" amino acids 1 to 166 (166 residues), 257.4 bits, see alignment E=2.4e-81

Best Hits

Swiss-Prot: 72% identical to ARPC4_SCHPO: Actin-related protein 2/3 complex subunit 4 (arc4) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K05755, actin related protein 2/3 complex, subunit 4 (inferred from 79% identity to cnb:CNBD3630)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (169 amino acids)

>mRNA_4833 K05755 ARPC4 actin related protein 2/3 complex, subunit 4 (Rhodosporidium toruloides IFO0880)
MSNTLRPYLNAVRSTLTAALTLEPFPSQLVERHNVPEVEAGSTPEVLLTPLVIARNASEQ
VLIEPSINSVRLSIKIKQADEIERILAHKFTRFLMMRAEAFVVLRRVPVKGYDISFLITN
RNVEEMMKHKLVDFIIEFMEVVDKEISEAKLSMNARARIVAESYLSAFA