Protein Info for mRNA_4834 in Rhodosporidium toruloides IFO0880

Name: 13202
Annotation: K02996 RP-S9, MRPS9, rpsI small subunit ribosomal protein S9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 PF00380: Ribosomal_S9" amino acids 253 to 399 (147 residues), 132.1 bits, see alignment E=7.8e-43

Best Hits

Predicted SEED Role

"SSU ribosomal protein S9p (S16e), mitochondrial" in subsystem Ribosome SSU mitochondrial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>mRNA_4834 K02996 RP-S9, MRPS9, rpsI small subunit ribosomal protein S9 (Rhodosporidium toruloides IFO0880)
MTALTQCARQPLRHAAPGARLASTASSSSSHQQPFFPVQSSPSGPVRQNPKPPSHLWYTA
RPTLNATVSSLERNLVQSRAYLFRQGLLRSIDPDALTANANSPDVDAQAGRTVLAHPRER
KWRVPEDMKAYIGTDGPLKARQYRRLTTLLSDLEGLLPHARIADRLADNLATSGTPRLVL
DPVALSSGRALAGSDPELVESVKGDAGEGLYAQIETLLERFRKVEVGGNQERVVGKARRL
GRVDEFGRVYATGGRKESNAKVWIIPASASASASSSSEPPIGRIIINDRPFATYFTQDPH
RQTVVRPLALTSTVGAFNIFAIVHGSGTAAQSEAVANAVSKALAEWERVEYEAGRRVEPE
TTYREILDRAGLIRRDPRMVERKKPGHVKSRKMPTWVKR