Protein Info for mRNA_4843 in Rhodosporidium toruloides IFO0880

Name: 13211
Annotation: K14842 NSA2 ribosome biogenesis protein NSA2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 PF01201: Ribosomal_S8e" amino acids 32 to 259 (228 residues), 158.5 bits, see alignment E=5.8e-51

Best Hits

Swiss-Prot: 77% identical to NSA2_USTMA: Ribosome biogenesis protein NSA2 (NSA2) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K14842, ribosome biogenesis protein NSA2 (inferred from 80% identity to lbc:LACBIDRAFT_316454)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>mRNA_4843 K14842 NSA2 ribosome biogenesis protein NSA2 (Rhodosporidium toruloides IFO0880)
MPQNEYIEESIRRNGRRLDHEERKRKRAAREAHKASHVAQTLHGHKAKMLHQRRYAEKVA
MKKTIKAHEERDVKAKDASAMPEGALPTYLLDREGQNDAKALSSAVKQKRKEKAGKFAVP
LPKVRGIAEDEMFKVIKTGKSKRKGWKRMVTKATFVGEDFTRKPPKLERFIRPSALRMKK
ANVTHPELKATFQLPIIGVKKNPQSPMYTQLGVLTKGTVIEVNVSELGLVTAGGKVVWGK
YAQITNNPDLDGTCNAVLLV