Protein Info for mRNA_4849 in Rhodosporidium toruloides IFO0880

Name: 13217
Annotation: HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 PF01565: FAD_binding_4" amino acids 109 to 257 (149 residues), 77.8 bits, see alignment E=7.3e-26 PF08031: BBE" amino acids 526 to 559 (34 residues), 29.5 bits, see alignment (E = 6.5e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (567 amino acids)

>mRNA_4849 HMMPfam-FAD binding domain-PF01565,HMMPfam-Berberine and berberine like-PF08031,ProSitePatterns-Oxygen oxidoreductases covalent FAD-binding site.-PS00862,ProSiteProfiles-PCMH-type FAD-binding domain profile.-PS51387,SUPERFAMILY--SSF56176 (Rhodosporidium toruloides IFO0880)
MAGTQIPLAAPGVAAGMVPYCLPSQPCWPSLDAWSALNASVTGRLIRPDGPLPCVQPQCA
DADWRLEQPASVMFLNFETGQGLIPDDPSRTSTSAPTNSSFSLPIDRTPAYVLEAHTPSD
VSSAVTFARDNRLRLRIKSTGHDYLGRSSDEGSFTLWTRRLNHSRFERDFVPAGAPEGTQ
GVPALVAGAGCIVRDLYKAADEAGVVVTGGVSQTVGAGGGFVLGGGHGPLAPLHGLAADN
VLEFTVVTANGTILRCSPYQYPTLFTALRGGGSAFAVVLETAFKAHTPPAGFVGIFGSFG
LRGGMGASKEEGKEAWREMMKRWTALQPKLSKAGPLAGYTYVRKPEPTPFAYILPSDDIQ
LAKDLFTPVFEACAADPNMSIDWKFVETKSWYELWSGPFTDALQSLDAVGIPLLLGSRLV
PKDVVEQRADDLANFLADSPSPAIVHLVAGGAVEKEPDFPSSVNPGWRTALLHIDLPISW
PTSAPPSTISSLSTYLTSHTLALGTLTSSLGHPQASYSSESNYYEADWQDVWYGKENYGR
LMEAKREWDPEGVFSARRAVGSEVVGW