Protein Info for mRNA_4855 in Rhodosporidium toruloides IFO0880

Name: 13223
Annotation: K02957 RP-S15Ae, RPS15A small subunit ribosomal protein S15Ae

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 PF00410: Ribosomal_S8" amino acids 6 to 129 (124 residues), 88.1 bits, see alignment E=2.5e-29

Best Hits

Swiss-Prot: 81% identical to RS22A_CANAL: 40S ribosomal protein S22-A (RPS22A) from Candida albicans (strain SC5314 / ATCC MYA-2876)

KEGG orthology group: K02957, small subunit ribosomal protein S15Ae (inferred from 78% identity to uma:UM00867.1)

Predicted SEED Role

"SSU ribosomal protein S15Ae (S8p)" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (129 amino acids)

>mRNA_4855 K02957 RP-S15Ae, RPS15A small subunit ribosomal protein S15Ae (Rhodosporidium toruloides IFO0880)
MRVSVLADCLNNIVNAEKRGKRQVLIRPSSKVIIRFLTVMQKHGYIEEFEEIDDHRSNKI
VVQLNGRINKCGVISPRFNIRLPDVEKWVSMLLPARSFGYIILTTSAGIMDHEEARRKHV
AGKVLGFVY