Protein Info for mRNA_4861 in Rhodosporidium toruloides IFO0880

Name: 13229
Annotation: BLAST NADH-ubiquinone oxidoreductase [Sanghuangporus baumii]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 67 to 89 (23 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 165 to 187 (23 residues), see Phobius details amino acids 204 to 222 (19 residues), see Phobius details amino acids 268 to 287 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>mRNA_4861 BLAST NADH-ubiquinone oxidoreductase [Sanghuangporus baumii] (Rhodosporidium toruloides IFO0880)
MAYGSIWDGSSVPLLARVGQHHGWLASTPPHTLIPFSIFAIVHAVRVACVYRGISRAGGY
DKQLGNLQAALVPLVLILGGSTISSVLLGQVPGWVITPIPVATYGLIPLLAAKSGLVSFV
LSLPTLPREAFFCLVDGFSRIMGMTTLGVDMVLAHPNNAVRNSPWAMILIAFLSGGGGGM
IVPAFRMFGPEWGFNATPAFIKTGLPIDVWSAGFIGYVYATLIDAHPFFRRPVAYALTHF
PALRQIFDVPKAYLSSPRHTVLLQPAEAKTFCSLLLAFMLFMSRIGLPLLRRTFSSSSPA
GKAAAQKRKAVAANVNSAKQATSSAIASGKEKVRERKNQ