Protein Info for mRNA_4865 in Rhodosporidium toruloides IFO0880

Name: 13233
Annotation: K12860 CDC5L, CDC5, CEF1 pre-mRNA-splicing factor CDC5/CEF1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 838 PF00249: Myb_DNA-binding" amino acids 8 to 53 (46 residues), 41 bits, see alignment 2.7e-14 amino acids 60 to 103 (44 residues), 40.7 bits, see alignment 3.4e-14 PF13921: Myb_DNA-bind_6" amino acids 10 to 70 (61 residues), 48.1 bits, see alignment 1.7e-16 amino acids 62 to 107 (46 residues), 33.7 bits, see alignment 5.2e-12 PF11831: Myb_Cef" amino acids 423 to 660 (238 residues), 233.2 bits, see alignment E=4.9e-73

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (838 amino acids)

>mRNA_4865 K12860 CDC5L, CDC5, CEF1 pre-mRNA-splicing factor CDC5/CEF1 (Rhodosporidium toruloides IFO0880)
MRVVIKGGVWKNTEDEILKAAISKYGKNQWARISSLLVRKTPKQCKARWTEWLDPAIKKT
EWSKEEDEKLLHLAKLMPTQWRTIAPIVGRTANQCLERYQKLLDEAERAENEELGLAGVD
DAGPSADDVRRLRPGEIDPDPENRPARPDPIDMDEDEKEMLSEARARLANTQGKKAKRKA
RERQLEEARRLAILQKKRELKAAGILMRAKPKKNGMDYNADIPFEKQPAAGFYDTSEEQA
KRVAAPTGKTLRELEGHNRKKDREEAESREKKRKAREAKDANADAMSHFVPTKDALLQQR
REEQQISKRRKLALPAPQVGERELEDLVKIGRAGESARAIVDESGNEASQGLLGEYSALA
NAKDARTPRTAPQHDNVMAEARNLRNLTAQQTPLLGEENTPMRELVGRTGFEGATPRGQV
AATPNPLATPFRSGQADVSATPASSVGATPLRTPARDSLSINDENASMYGATPRDQRHHL
NDVKRQLRAGFSTLPQPKNEFELVLPEEEEEAAAVEAASAEVAKAMRIEDRAEREARLQE
LREIEEKKELERRSQAVKRGLPRPIEVDAAAMLAQLELESNDSDAPEQDKWRREAERAVT
IEMIRLLEHDSIVYPVAGSKRPGGGKSTLPRIADEELAAARKTVHDEIAQAVGLPGASEK
VLRRTVAHSPEEFEKAWRPSYERLAYDAKTDRYVDKESLSDADRIAGFRALIESNRDKMA
SESAKAAKAEKRLGQLLGGYVARSKMLAGKLTENYDDLARTRIELESFARLATNEEGAIV
RRTEALRDEVEKLERKERDGQMRFKELLDLKERLEAEVQEMEYAEAERINEQALAMEE