Protein Info for mRNA_4866 in Rhodosporidium toruloides IFO0880

Name: 13234
Annotation: KOG2881 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 13 to 36 (24 residues), see Phobius details amino acids 43 to 63 (21 residues), see Phobius details amino acids 75 to 92 (18 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details PF01169: UPF0016" amino acids 16 to 88 (73 residues), 69.2 bits, see alignment E=1.5e-23 amino acids 189 to 263 (75 residues), 76.1 bits, see alignment E=1.1e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>mRNA_4866 KOG2881 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MIDLSFPTSTDGFTRAISVILTSEIGDRTFLIAAILSMHHPRITIFAAALSALGVMSFLS
ALLGNILPNLLPKRYTTAAAAILFFVFGAKMLREGLEMEGGEAGREKMEEEMREVQKEVE
EAEEEVTGRPTGVALGDMEEGRTPTPAPEGELPQPVTGRSRRNSVSKTKDSALAGIKNLA
QLLFSPIFIQAFILTFLAEWGDRSQITTIALGAAHNVWVVTVGTTFGHSICTGGAVLGGR
WISQHISIKHVTLGGAVLFLIFGVMYSYEAYTFTEEVVVGKVL