Protein Info for mRNA_4867 in Rhodosporidium toruloides IFO0880

Name: 13235
Annotation: K06634 CCNH cyclin H

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 PF00134: Cyclin_N" amino acids 118 to 200 (83 residues), 35.5 bits, see alignment E=7.6e-13 PF16899: Cyclin_C_2" amino acids 205 to 336 (132 residues), 67.7 bits, see alignment E=1.1e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>mRNA_4867 K06634 CCNH cyclin H (Rhodosporidium toruloides IFO0880)
MAVQIGTNAQNAAASPAVPLYHLSSQFRHWRYSKEQLEQIRKELNEQAVERVRKSWEEER
ASREAAPSATKAADGSTPSTSSAPPSQPATPPEPSEIEYLTVADEQALVGYYLTQAVALC
GALKFPEMVLATAITYLKRFYLRNTCMDYHPKNIMLTCVFLATKTENFPTSIDTFAARVK
TPPADILSLEFLVSQSLHFEYKVHHAHLALSGLVLDLQTAGCDASSIASALPRAQAFCRT
SRLTPAELVYTPSQIALACLRLADPSLVDTWLSDKELRREKAEDDRKEKQVKAGGNVDGD
GKRPQTDGRKPDAPEAKAMQREQLLKVLDEVQAMIQETQRNPVDKEKVKDIDRRLRWARN
PEKDPNSALYKKRKAQEEAEREEKDRAKAAKRDKAAQDDASVFD