Protein Info for mRNA_4877 in Rhodosporidium toruloides IFO0880

Name: 13245
Annotation: KOG2533 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 42 to 60 (19 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 231 to 255 (25 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 303 to 321 (19 residues), see Phobius details amino acids 328 to 351 (24 residues), see Phobius details amino acids 361 to 383 (23 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details PF07690: MFS_1" amino acids 10 to 378 (369 residues), 104.8 bits, see alignment E=2.5e-34

Best Hits

KEGG orthology group: None (inferred from 52% identity to bfu:BC1G_05187)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (453 amino acids)

>mRNA_4877 KOG2533 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MDIRILPVVALMYLFCFIDRANIGNARVAGLEKDLHLKGYDYNILLTAFYTAYVAFEFPC
QMINKAVGPGKTLPIFSFLFGLFSMAMAFVHTFGAAIAVRFLLGVAEGAVFPGIAFYLSR
FYRKDELGFRLSCYIVCAPAAGAVGGLLASGILKIHSIGWLRQWRMIFLIEGIISMGIAI
FSWFVLADRPEVCSWLTPEEKALAEARIKIDNVGSTVVVDAIHWKAVWAGILNPVTLASS
IIFMFDNTVVQGVGFYLPSIIKSIYPTSSTIRVQLLSVPPYVLGSLTTLATGYFSWKTRN
RTLYMMISAPFVMLGFAMYIGSMNAHVRYAAAFMVAIGAFSFGSLCTAFSAANVTSDTAR
AAALGTTVFMGNVGGLISTWTFLPRHAPRYLPGNAFNLAGSSIMLILSVAIWLWMRKENR
AKENGRDDHYIEGKTDQEIADLNQKHPAFRFAY