Protein Info for mRNA_4879 in Rhodosporidium toruloides IFO0880

Name: 13247
Annotation: KOG1259 Nischarin, modulator of integrin alpha5 subunit action

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 855 PF13855: LRR_8" amino acids 351 to 410 (60 residues), 41.9 bits, see alignment 7.1e-15 PF12799: LRR_4" amino acids 352 to 392 (41 residues), 27.5 bits, see alignment 3.3e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (855 amino acids)

>mRNA_4879 KOG1259 Nischarin, modulator of integrin alpha5 subunit action (Rhodosporidium toruloides IFO0880)
MPDTPTESTPRPSSLSGPEYLSALARFIKQHESALAAYYAPRPKQQRVATAPSWTTVLSL
GILPGPEVPLSPSPPLPRKDPLVLNFDPHHLYYLLLKFDELGIAGLGDLDVKVEGGTSRP
MMVDYSAVTGSASGSASLFGGMPGAGMLGLAKGDDTRSVRSGMSSFSFGSGWWGLGGKQP
ALEDEATSVRYIYSSCTKLPALKLAPFRVVLSPPNGKDTVPALQRAVDGFEDCPPDATCV
PIFAFKNLQSLVLEDLDPRGFTGWDVLSVQLRSLEVHRGGIEDIGELICDAPCEDWARRA
QEETRNRPVGTERRRRVEGATESSLAALPASNGDAASATSPYPTPPKLAWSSLRHLSLSD
NSLTFIPSAPLTFLPTLTSLDLSCNLLISIPTGLAHLTSLRSLNLRDNMIDSLLGISQAI
GAVEVLNLSGNRIDNLSGLDRLPALVRLDVRDNNVHEALEVSRLATLPHLREVWVSGNPF
ARKREEGGEENWRAKCFGYFLEEEAHGHRDASVGEIWIDGAVISSSEKRLVEADFRRRGT
PLGRRRASAGAAERVAESRNGQAKVVGRRVVTTPHRAHAPARPASPPPPLPNAPASAPTP
DAAQPSKSPVKPKRRKPRRIVDLDADPTHPDPPHPSIQVHTSDSDTLPSSGAERTRAVTA
GSSSSPANSLRNTASSSPSKRREQVSLSTFHEPSSPESGGEAFRKRIEALRDEVGESWLS
VLGEREARAELKRKELEEQRRNGVAESSSVPTLVKGTPRPEQAKEVEVVAPVPVKPDEAP
VEPATSPATEVAPVVARLEDEAKTPAQEEDDDGETVDKAPDPSVPTAEVAEPEAIPTVVK
SVRKKKGKGKKKGGR