Protein Info for mRNA_4881 in Rhodosporidium toruloides IFO0880

Name: 13249
Annotation: K01890 FARSB, pheT phenylalanyl-tRNA synthetase beta chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 692 PF18262: PhetRS_B1" amino acids 1 to 78 (78 residues), 92.4 bits, see alignment E=3.3e-30 TIGR00471: phenylalanine--tRNA ligase, beta subunit" amino acids 1 to 582 (582 residues), 492.4 bits, see alignment E=8.1e-152 PF03483: B3_4" amino acids 110 to 271 (162 residues), 93 bits, see alignment E=3.7e-30 PF03484: B5" amino acids 307 to 389 (83 residues), 62 bits, see alignment E=1.1e-20 PF17759: tRNA_synthFbeta" amino acids 393 to 687 (295 residues), 165.5 bits, see alignment E=2.5e-52

Best Hits

Predicted SEED Role

"Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)" (EC 6.1.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.20

Use Curated BLAST to search for 6.1.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (692 amino acids)

>mRNA_4881 K01890 FARSB, pheT phenylalanyl-tRNA synthetase beta chain (Rhodosporidium toruloides IFO0880)
MPTVTVDRVEFFRRLGREYTTKEFDELLFQYGLELDEDTTTDPDHPAGEPHQLKIEVPAN
RYDLLCIEGIARALKLYLSPDSGVPTYALKHAPAGEARTVRVKAETSQIRPYFASAILRN
VKFDKLNYASFIDLQDKLHQNLARRRTLVAIGTHDLDKIAPGDITYEALPPKEIKFAPLN
KTQEYTAEEMMALYKEDKHLSRYLHIIEDSPVYPIIYDSSRQVLSMPPIINSDRTKITLD
TKNVFIDVTATDQTKLDIVVDMIVTMFSEYCSEPFIIEAVNIVYEQGCTGGPRTILSPPL
TSRPFVARASYINSCTGLNLSRDEIIVQLRKMGHAANTPDNHPNFSPLNAQASLQIAPED
EIHVYVPPTRPDILHECDIMEEVAIAYGFDNLKKTFPRTNTVAKPFPINKLSDILRRLCS
EASWTEVLPLILCSHDENFEFLNRKDPGDLAVVLANPKTIEYQIVRTSLLPGMLKSVREN
RKHTLPLRIFEVSDVVVKDPQEERQARNVRRLGAVFCGRKAGFEVVHGLLDRLMLGLGIK
NLVTESSSGEAGYYIKASEDATYFPGRSADIYYRPGTAGEVHAVLAPTASTHLEDAQAAP
ASTPPQAPTSTLAPSQPAKKVEQDDSAKKGALDTIKDALASALPSVATKAASKTTVRDIK
IGSLGILHPSVLKAYELDYPCSSLEFDVEPFL