Protein Info for mRNA_4888 in Rhodosporidium toruloides IFO0880

Name: 13256
Annotation: K20044 PICALM phosphatidylinositol-binding clathrin assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 847 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07651: ANTH" amino acids 14 to 252 (239 residues), 135.6 bits, see alignment E=1.8e-43 PF08226: DUF1720" amino acids 333 to 402 (70 residues), 23.5 bits, see alignment E=6e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (847 amino acids)

>mRNA_4888 K20044 PICALM phosphatidylinositol-binding clathrin assembly protein (Rhodosporidium toruloides IFO0880)
MLSPSLILPFLAQYIDPIVQATFSQDGQLQDIVRTLATRLRDPNPTVVFKSLITLHTIMR
SGSLDPVFSYLSSSSISLSLSGQEAANVAAYGHYLASRIKAYGNLKRDVIRDKSDRRAAN
RLRKLTVEQGLLRETREIQRMIAALVDSKFYTEDVDDDVSMTALRLLVKDLLVLFACVNE
GVINVLENFFGMSHVDATTALKIYKTFCRDTEKVVAYLGTAKKLYNVLNIPIPNIKHAPL
SLASSLEEYLNDPNFEQNRQEYKGNKRIADGGTPRSSTPKATATTNGSTSSAPAASSPSA
PSTSEPSSSNAPKSFTDFFESIETSQVSMFNSPQMGGGHFQQQPMFAPFAAPQATGMPFM
GQPTGVMPQMTGNPFLQPQMTGFAPMQQPQMTGFLQPQATGMMANPFRQSMMMTGAAPNP
FGQQPQGMMPQATGMPFASAPPPVPQMQPQMTGMGSPFGRIQPQATGNPFGSLGQRPMSI
MPQATGNPFQQQQQQQQPQSSFSSMPPPVSSAPVASGAPHLAPTTSASSSSPAPLVPQKT
GARNPFAPAPGIIIPQTQPKPEPGPSMNELASNAFAARLASQYQQQQPMQPQQTGFQASQ
VNGTATGSSTPSQQQQQAPKLDAFSAFVKQEREKEAAAAAGTPLIAQKTGGLFASIASDL
ARTSSPSAAGSQNSTSPFSSGPATSSTTPFSSFFTPSSLSTPFSTMSLSAPGSAPSPFSS
STNSTSAPFLTSQPTGFAGSSVKPFQPSSSFGSKLASELGTPSTLSAQPTGFGSSLSPSG
TNGTATSSSSASPAPALQPQSTGFSAFGGTKLPPLNTPLSAGLTTQQTGTGGFGGAGSTG
VATGSLI