Protein Info for mRNA_4890 in Rhodosporidium toruloides IFO0880

Name: 13258
Annotation: HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1382 transmembrane" amino acids 994 to 1014 (21 residues), see Phobius details amino acids 1178 to 1199 (22 residues), see Phobius details amino acids 1212 to 1241 (30 residues), see Phobius details PF12768: Rax2" amino acids 1061 to 1252 (192 residues), 150.9 bits, see alignment E=7.6e-48 PF00018: SH3_1" amino acids 1333 to 1377 (45 residues), 39.5 bits, see alignment (E = 7e-14) PF14604: SH3_9" amino acids 1333 to 1381 (49 residues), 33.2 bits, see alignment (E = 7.6e-12) PF07653: SH3_2" amino acids 1337 to 1381 (45 residues), 22.1 bits, see alignment (E = 2e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1382 amino acids)

>mRNA_4890 HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322 (Rhodosporidium toruloides IFO0880)
MAGVAAAQSSSLPQVDFSSLGTVAVVGNFAGLSLYDASNPPQTYDSRASTLLARTADGDL
RRVGATDDGGSISAICQSPDQIVFVGGNFTSMGGVAAANIAGYNSSSETFFSLGDGLKGE
VRTLSCNGTTVYAGGDFTGSTGGPNVAAWSISQKAWTDSPLYGFNGAVESIQPSQDGRSL
FFGGAFSTTFSNSSSAGTLSSSSSSPSSTDPFPSLGSSLTPISLNSSDYWASPTTWESGF
GRPQYIFCPRHADGVGASWLLVDGQAGFFIARMYRQLNVRGIRLGNTFYEGRGTKNFSVV
SIPDDQVLELTYASDPSDPSSPLVTCSSDCPLAHNASVPYQDFLFPEGTSLTGFQLNIFG
WYGAGGGLHLLQLLSEGSYAYAVADDNLSPCTNGLGASTQASVSTSGSWTKASVTTSIAG
TTQEVLVANVQGGSGAKNAPSVTWQPYVAESGQYAVYFVTPGCTQAGTCGQRTSVLVTAT
PKGGSANETTVDQTNAQDQSTLIYNGTLSAGVDSLSVKMTLAANGAPTAGTTYQIVADYI
NLVAASTNGSSVRIERGFGLYEYPLVDTGVFGDAVPTAQAKGVNASSTLTNATGFDAVSF
RLEQGAVVNSIVSVGTGSDAQIFVGGNFTFSNNSQVSHNVLAYKLDQVIVAPNGGLKGIV
HSLVELNGALYAAGTFTATQDNAVSGLQGIAKWNYSSSTSKAWEPLGSVPSVGGTIQQLA
AVGSGANAAIVAAGAGGSGLAFYEPASSSWNSTAAGLFLGNLTAVGTAASPTSSNATTYL
AGNILAAVKNGAPGGAVLSSDKHGNPQLSSLGFGFNTSSSSSNASPALSNSTASRRALIR
KSAPRLALEPRAQPASSVNLTLPSPIQAIAATASGDQILAGAFWKNGSTNLMLVGGSFAS
SAGVANLGAYDTKAQTLSALPGESVTGTVTTLDVIGDTLWVGGNFTTASGRQGFATYDLQ
HTTPDDSQPPLSGWAGTNATVNAIAQRPGYDDQVIVAGAFASAGSLYCASVCLWDNKKLQ
WSSLATGLQGVVGAIDFAGDKSEYLIAAGNFVLNDETRYIARWSFKNSTWLSLGAANDLP
GPATAVSADDHNEDKVFVAGSSTSGSPYLRYWNGTTWSDITNNTLGAGSGIQQLAFVPLS
NNHAANKVVESDRMLLVSGDLQINNTAVSSALYDGESWYPYLIATSATGSTGIISKLFYS
VSDFSLGGGHHLAAGLVILISIAIGLGLVFLLVLIGLLIALARRKDEPQYPPPDARRGYE
SGTETSSINGLHRPNSLLQTVGAATAVLLDPKGEKAVDHDSLNGGAANGSFDDGALGYGS
DYGDDAEPSTALARYSFHAEHPGELTISTNEQLTILESSDPNWWMVANSQGQRGLVPLSY
LA