Protein Info for mRNA_4895 in Rhodosporidium toruloides IFO0880

Name: 13263
Annotation: HMMPfam-Etoposide-induced protein 2.4 (EI24)-PF07264

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 69 to 90 (22 residues), see Phobius details amino acids 95 to 123 (29 residues), see Phobius details amino acids 182 to 205 (24 residues), see Phobius details amino acids 239 to 272 (34 residues), see Phobius details PF07264: EI24" amino acids 49 to 260 (212 residues), 58.5 bits, see alignment E=5.5e-20

Best Hits

KEGG orthology group: None (inferred from 53% identity to scm:SCHCODRAFT_44638)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>mRNA_4895 HMMPfam-Etoposide-induced protein 2.4 (EI24)-PF07264 (Rhodosporidium toruloides IFO0880)
MSSSFTSTGDKQTLVQRQVNKGVEQAKEDLHALANVGAQAVKSTAYVYPIKGILYFLSHP
KLLDSLKPFIVRSFSISMVTAALMFTFTYFPQVAFLAFISGPLAFVAAVPLVLAESYFII
LFLHRTFLTPAIAERIFDAVLVQKGYSDLVENGRSLTRRGGSVELGNSLLAPVRNKFSAQ
GLVRYLVTLPLNLIPGVGTAVFLFLNGRKAGPSMHDRYFQLKKMDKQSRKRFVNERAAAY
TSFGVASVALNLIPLFGPVFSFTSTAGAALWAADLEKQQRGGSGTGAGVGAGADKKDENV
DVNPGRVEL