Protein Info for mRNA_4898 in Rhodosporidium toruloides IFO0880

Name: 13266
Annotation: HMMPfam-TAP-like protein-PF08386,SUPERFAMILY--SSF53474

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 626 transmembrane" amino acids 26 to 44 (19 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 115 to 550 (436 residues), 74.6 bits, see alignment E=1e-24 PF08386: Abhydrolase_4" amino acids 480 to 579 (100 residues), 65.7 bits, see alignment E=3.7e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (626 amino acids)

>mRNA_4898 HMMPfam-TAP-like protein-PF08386,SUPERFAMILY--SSF53474 (Rhodosporidium toruloides IFO0880)
MGSKEIEKLPAPAAAPAEPTRGRRNRYALLLGVVVLAGLRLFAWSREGQGWMQAVLNPRT
TLFWYPCPDDSTTLCSFLNVPLDYMDPRPNETVSLALRMIPATVSPKEQLGYLFTNPGGP
GGSGTAAVASYGRKLAAIVEGRYNVLSWDPRSVNLTAPALGCFSTDGDANRFVRDIEHLG
LPFEARGSPSLGFSTNASLAAEYAWTVKLDAFEQALASSCDPDAAHKIVRASSTAFVARD
MKRILEALGEKKLSYWGFSYGTILGATFSAMFPDLVERVILDGVSDADSYTNDFWEWGRS
GMSDTRKTFEGFFSACAKSGPAGCAFAANDSTAEGLEERYHDLLEKLRQEPLPVSHSDVG
PGILTPSDVEYTMFHALYAPSTWPNMARLLAETERGNGTSMYATANVASGKLARKDPARH
NPFHRAMSTGSSIASTAAIMCSDTDPEALRDTSTRTLSQYMHDLRKESRSPTADIWAIWI
STCRHWKAKAIETYRGPWTVADGLKKTNFPIIFFSQTADPVTPLKAAEKMAAGFGNSSAT
LVKQNGFGHCSLAHPSLCTAKIFRSYFLEGKVPAWNTTCDSDDGFLFPHPDAKVREVEAL
SVEDAELRRRMWDLSRSFKEARLGPL