Protein Info for mRNA_4908 in Rhodosporidium toruloides IFO0880
Name: 13276
Annotation: K15163 SRB8, MED12 mediator of RNA polymerase II transcription subunit 12, fungi type
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1870 amino acids)
>mRNA_4908 K15163 SRB8, MED12 mediator of RNA polymerase II transcription subunit 12, fungi type (Rhodosporidium toruloides IFO0880) MSRPPPQRRTHPPPPAPAPSSSSSSSSLPTSSSSTSAGPPPPPGTLQTTPSTSHTFHASR LDAILAQQGLERWRLTPPRWRAPWIEDRPAESGDTGTTGTGLRGGRTGLKAAAGLMAGRP GLLASSSSSSNDLDPSNPAQSLADDSAELAERAAVKLFPVFYPPRDGMDEDQMGEQVVKA GYAAKPSVQAETFSAHQHIYDKLKTSDILGNLSRLVAAVQAKADERLPSYGPSTFRLPSR ITLTDSKREAWFSDLASPSVPLSKLSRSVPHGYKGEKGLDMLSKRKVEVGRAVWFVRAFG GVEIQSLSKTRPLQTAISLYTSEFTTVVSEFVRKQLHETILPPCSSAPSPAAPASSVPTM LATARQRSSSFSKPAGSGAGTPALGMAGAAATAPNGLELLDEERRKSWEDKFEYTLRLVS SLYHESLLDRPQFLRFLTSLLTPPSPVPPTPSGATSILGYLTFVLVLVEEYWADLGENDP ALGRFGRGCLERLAELDHAPPSSLLDHVRSTLHALLRSAFLANPDSFVPLLPSPLLPASS SSAAVGERLRGILLESGKSGEDELDREARETIESDLEELSVRRGALRAALALHLESAAED EAEKEKEEDKASDQAVLNAIERLDEIEFPVRIAEVHKAIFVDTSVPPLSSSKPSPSSSSS SVPPLSLAHALPLFFTYSTATPSRPFQAPHRRYAVSRLIAIELERLTSGQKRRVTRSAGG EARVPSVEDAFVKWVDERFATPSAEGGTQTLRELVRLLLEELLRAGVVSYGAYLQRMIAR GETERPLSSSSASLSEEGGAESIHLWMLRTVAMEAAAGGGGGARRRVAIGGQEGVERALR TEERIRLARTELERLVFSPASAPLSTSSTCATLLDTVRALTEEGSQWVLTRDIVPDGLSS RLEPETGKLRIGREEMAVVAAVYEVAQDWSGLLQLFLVLLQLSPPPAVVLHILDIVKGHL DVWISLDSLADLGTAVLGAFDSLKAVEGPHRRRLLSFLQSLAAAGYLPAQAKETIDTEMR NLSLPSPASTLSASNPKTPPLPSPLPEIQTLLVDSSEVAIAQLASTLWFRYHSHPDWASA TLESVLHILPQLDSVDPAIAVLQTVHDRICAGIGPAVSRWAGSLSAIVAAAVLGGEGGAR VAALFGRLVVEGVLSAPFVLDKVVLPVRRALLSQLTAATEPAAASIDPNVFRALQCSHAI LSSVIALPRSREDRDARETDEADQTPPSTPATLASQQRLHSRRIALGTRAALTAVAQAIS LLVIEQEVANTLAVEDLARPASDFLVQLGALPELQTLFTRDPKALMDGMLRIPALTTIPR IETFRPKLLLGLLAMLKDGGASTPANLVSTEDWDVFLSRLTLWRLAVSKVEVEASLERLE SDAAISAADKAAAMHTLSEHFLDRICGGTGQSFLGEQIVRCYDGGAASEELVSVAFDRLA DALDALAQSAGSPDHDKQSFRTLSTVAALLDTLQQGGQLAARDSAIERLLTAIKACICLE RLGRTAKDGAVEEASAEPVILFVVHLVSVALRCAKLPSPRAIAELFRDCLAPLARLSATL SKGTIRDFQLSTLLLDACSHIIYTFPDLSPLVRVPTLQTLLNPCLTNPPLAIDFIPDATF SRLTHLFGPYAPSSLVPNPWELLDHTDPSSASTALVRKSSQPPLQLINAGPIDLAAFRAK IIETIPAVTALDAVSTISTGSSGTNATAASHFERGRQTNFDFETPCTTLSIAARDHRRTT AVTRMLASRIDAGSVAAAASAAAAAQAAAIAQAAGVSANARKRPASGSVESTGRQAPAPP AATASSAGATGRGSKRKSTTEVVVLDSDDEAEAPSKPKKAKASASGTTGRTGGKTTASKV PASKTTKRKK