Protein Info for mRNA_4910 in Rhodosporidium toruloides IFO0880

Name: 13278
Annotation: K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 916 PF00400: WD40" amino acids 105 to 139 (35 residues), 25.3 bits, see alignment (E = 5.5e-09) amino acids 143 to 190 (48 residues), 21 bits, see alignment 1.2e-07 amino acids 196 to 232 (37 residues), 27.9 bits, see alignment (E = 8.2e-10) amino acids 401 to 432 (32 residues), 20.8 bits, see alignment (E = 1.4e-07) amino acids 445 to 483 (39 residues), 16.1 bits, see alignment (E = 4.4e-06) amino acids 505 to 537 (33 residues), 17.4 bits, see alignment (E = 1.6e-06) amino acids 557 to 593 (37 residues), 31.9 bits, see alignment (E = 4.5e-11) amino acids 598 to 635 (38 residues), 23 bits, see alignment (E = 2.9e-08) amino acids 640 to 676 (37 residues), 19.2 bits, see alignment (E = 4.6e-07) PF08625: Utp13" amino acids 698 to 892 (195 residues), 156.5 bits, see alignment E=1e-49

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (916 amino acids)

>mRNA_4910 K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13 (Rhodosporidium toruloides IFO0880)
MSNPRPRFKTSFKDVKAYSPVHTGGKATLSGDGSWLVSTLNEQALVTDVETGEQIQEVKG
DTSAVTTLAVTPSPFSPQDGGFLLTCCRSLAIHIYSLPSLDLHRHIPRAHDAPIITCCAD
PTGTLFATGSADGIVKVWDAAHGHCTHVFKGHGGVISAMVFDIASAGDGGKQGRARLITG
ADDCKIRVWDLRTREGLHVLDGHVSVVRGLDVTKDGKLLVSGGRDKVVNVWDLERGVLRK
TMPVFETLEAIGLVEVPQSSDRKGKGKETDASRRKAVFTGGDKGVVRLWDLQTGEQIKTA
DETAGKVHEIVDVIHTPAISSLTAVYVDQNLVTRSLPSLTTTRQIIGFNDEVIDTCFLTP
PTASSSSSDDVAFSPESQLAVATNSDLIRVYDLNRFNTSLLEGHDDVVLCLTRTADGQVL
VSGSKDNTARVWAASANEEGETAWRCIGRAEGHVESVGAVATSKRDRHILVTASQDRTAK
IWDLASLLSRPPSAEDGPSALRALSTTKIHDKDINSLDIAPNDKLLASGSQDRSAKLFAI
SYTAATKSTPASASLSLLGTFKGHKRGVWSVKFSPVDQILATASGDRTVKLWNLNDFTCV
KTFEGHANSVLRVDFLTRGMQLVTAASDGLVKVWNVKEEECATTLDNHEEKVWALAVSKD
EKYVVSGGADSVITVWEDVTETEELEKMQEQEELVLKEQDYENFLSMKDYTNAIMLALSM
DQPRRLLNLFTEVRQTAGTSNSSTDPEADLASFTGSRHVDAVLQSLSPKEIRQLLGYIKD
WNTVSRTAEVAQGVLHAILKFHDADKLLSYLEGKGDDGEDLLDLATAAEKEAGENEAEDD
KDKGKKRKPKRAPEVKAADVLGALIPYTERHMTRADKLVRESFIVEHLLGMMEGFDDFDV
EGQPNGMDVDGVDEEE