Protein Info for mRNA_4924 in Rhodosporidium toruloides IFO0880

Name: 13292
Annotation: KOG3012 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 158 to 184 (27 residues), see Phobius details amino acids 192 to 216 (25 residues), see Phobius details amino acids 228 to 253 (26 residues), see Phobius details PF05216: UNC-50" amino acids 35 to 254 (220 residues), 283.2 bits, see alignment E=7.2e-89

Best Hits

Swiss-Prot: 43% identical to UNC50_DICDI: Protein unc-50 homolog (DDB_G0292320) from Dictyostelium discoideum

KEGG orthology group: None (inferred from 56% identity to scm:SCHCODRAFT_31421)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>mRNA_4924 KOG3012 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MLPTSRAPRNGQGAQFSSAGNGFPRLGNGGMKTWLRKLSRWPQLDFELAVWQMCYLCIAP
RRVYRNVYYHKQTKNTWARDDPAMLLLITLCLFVSAILWSVLYAHYGIADTVKTIFSFIF
LHFFGLGLLISTSLWALSNRFLTHATHVHATDQKVEWLYAFDIHANSFFPLFLQLYVAQL
LLAPVVTRSNWVCLWVGNTLYLAAFTQYAYVTYLGYNALPFLIRSELLLFPVAIFAAFYI
VSLLGFNVSYFVLKHF