Protein Info for mRNA_4930 in Rhodosporidium toruloides IFO0880

Name: 13298
Annotation: HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 transmembrane" amino acids 37 to 57 (21 residues), see Phobius details PF00240: ubiquitin" amino acids 121 to 167 (47 residues), 30.2 bits, see alignment 3e-11 PF02179: BAG" amino acids 259 to 355 (97 residues), 77.9 bits, see alignment E=6.7e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (368 amino acids)

>mRNA_4930 HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491 (Rhodosporidium toruloides IFO0880)
MLVRSSDHPAAKALVDLAANPRLHAFYDSTTDLLLRNLPLVVSLVGLALHLFISDLARKR
SERNYQRLANQRYEMGDYGLGTPSQAAAGGGAGQSRRSRDDHGVVEVQWGREKLRVPLPP
PNSPLSTLRATLYNQTGVPPSHQKLIYAGAVLKDDLLPLSAYGLVDDDESVASDGAEEGA
KKSFWDSWALMGRGGAKKKVKKLVMLGSKDVSARVDDRLSQRKDLADLAAQSSSSAGEGV
SGGAEEKKVDSEEAVQRRIREISTQKLDELEPQVKQVESWLAQEQTRRASFPSISAEDPD
APAPPRRTLLYLSEVLLQGLLKLDSIEIPSGYAEARRERKEAVRRVQEVLDRVDSAKEGW
KKLGLSLA