Protein Info for mRNA_4932 in Rhodosporidium toruloides IFO0880

Name: 13300
Annotation: K11547 NDC80, HEC1, TID3 kinetochore protein NDC80

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 739 PF03801: Ndc80_HEC" amino acids 171 to 307 (137 residues), 82.1 bits, see alignment E=1.7e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (739 amino acids)

>mRNA_4932 K11547 NDC80, HEC1, TID3 kinetochore protein NDC80 (Rhodosporidium toruloides IFO0880)
MAERRRTIASNQLPYNQPQVPSSIPRPANTGLRQSLAPQAAGRQSLAPGAFGGGMRGRAS
MAPSAYGGAGGGLGDSQLSSSSQPQGSQGAAGGSQFSQGHGGPPMTVSRSGHTYSSNMGG
SMSVARGQGALRSSMAQPYGLDNVPGTERRTSTFRRSMAASVIATPGGGHIGAPSRHLKS
SVDPRNYKTREAREAMNEDILNFCGERQFDLTKEDLKSVTQVKFWQLFEWLVKQYDPQVV
FTTVDKTGAKKDQKTVVDAIIQVMQACQYPFADKVSKSHLQAPGSASNWPGILAMLHWFV
VTVKARETAFLSAASLQVPAPDYHARLAAGEDVMDDAWREYTAKAYQTFLQGGGVAVAGP
DGQESYVYPEEEDELRDIVNQQTETLRRRVEALRDEHDKLVREWQELSKTPDEMIAFQSR
QEKIAKDIAGYEDSIEKYKASIQARAMDKQRLQGEIKRIQEGIEAKQAERAQLERIIKGQ
KLTPIEIQSLNADKETLGKQIREAQERYRNAVTRTMNFEVDMSNAIAKATALAASYEEKA
QALGLLNGPIEGFEDVPFVQEINSASDSPVPEGLATQVKPALLKLRDRTKHEIREVNNQD
VQVEEELTRLAEDVADLREALNQREQEVQVAKTEANRMDDASRREVETSEAELRRLEAQV
ASISATVDRALVEANHRYEQRNVERMAANQTTNAVRRRNRDALEQAIEQFMSYKEHMNDG
TDKLAVLLDEVVASGCLAR