Protein Info for mRNA_4959 in Rhodosporidium toruloides IFO0880

Name: 13327
Annotation: K08269 ULK1_2_3, ATG1 serine/threonine-protein kinase ULK/ATG1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1062 transmembrane" amino acids 863 to 879 (17 residues), see Phobius details PF00069: Pkinase" amino acids 50 to 145 (96 residues), 69.5 bits, see alignment E=4.8e-23 amino acids 174 to 358 (185 residues), 129.4 bits, see alignment E=2.5e-41 PF07714: Pkinase_Tyr" amino acids 52 to 317 (266 residues), 137.4 bits, see alignment E=8.7e-44 PF12063: DUF3543" amino acids 763 to 1023 (261 residues), 218.9 bits, see alignment E=1.2e-68

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1062 amino acids)

>mRNA_4959 K08269 ULK1_2_3, ATG1 serine/threonine-protein kinase ULK/ATG1 (Rhodosporidium toruloides IFO0880)
MPAPRSTDTPSSHRPHIHHDPPTPQHRTHGHARRHATRRDADDEDRIGPYVIAEEIGRGS
FATVYRGERQDTHAPVAIKSVIRSKLTSKLLENLESEISILKRITHRNIVELKDCLKTDS
HIYLIMDFCSAGDLSLYIRKRGDLPSLTASNQGLLPDSRRSAGGPEKVLYPHPKEGGLNE
TIVRCFLGQLVDALRFLRSQNVIHRDIKPQNLLLQPASAADLEAGHPPGIPVLKVADFGF
ARWLPSQSMAETLCGSPLYMAPEILRYEKYDAKADLWSVGAVLFEMSVGKPPFRAQNHVE
LLRKIERGEDRIKFPDEKRLDEVDEGKVPTKVAADIKALIRRLLKRHPAERMSFEEFFRE
AAAVAQLKGFSSAESVSARVGQVTGKRDPARGPPAVPPESVAANSTDRRTFGTVPPAAFA
TQQSSTPIVPRASPGPPPPLYPRPSSASLAPSPVPSVPSPPPPEAISRFATSDDPPPFAR
RPSSAARASPSPPLAGQQGPPPIARRTPSYAPTRSASGQQQQEGPAGGEAVRTKDYAAQR
VGAGTPIGTISRRSSESPAPPSPAPPSAIERFKATNEPSDSMTDSNDSVLGKDYVVVEKR
TVEINALADELAQQNPRREGVVARRPSRGFLTRPLSSVGNPAATGPSPPSSSSPSSPYPP
AGDSTPPFAIPQRAQPTPHHPYSLSSSPRPLSFLSNSPRSMDRFPGSPLALVGSPSAALA
KAFSNLSSLKIFGSPTDGILVRRSSARKPIPRSMTAPMAVDPEEERVLADLEDIAQKALV
LFEFADSKILQILPPTPAASTSTTSLGTPSYFSHLAAREQAQAQSANVSNPFSPIPTSPS
MRRGSSSSSDRPLIMASSARADVLAAEAMMLYLKALAFLSKGIERARKHWANRPTEQQAA
SADFNDAVQWFRQRFNECFDKADFAKTRCGEEIPESATYAEKLVYDRALELSRAAAVNEL
RGENPTDCETAYETALWMLYALLDDTIRTPKTATPAEIEEDRTTVTRFVQSITGRLQALR
KKIAPVSAIASGPTTGASTAIAGSPRSTTGASPSPSTGSPAS