Protein Info for mRNA_4965 in Rhodosporidium toruloides IFO0880

Name: 13333
Annotation: K15156 MED14, RGR1 mediator of RNA polymerase II transcription subunit 14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 PF08638: Med14" amino acids 55 to 247 (193 residues), 188.7 bits, see alignment E=3.7e-60

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1023 amino acids)

>mRNA_4965 K15156 MED14, RGR1 mediator of RNA polymerase II transcription subunit 14 (Rhodosporidium toruloides IFO0880)
MDTLTAPPPLPPPTIPNGTSSHSQPSTSTHAHSSKDPQPEPALERELPVILQDLVPLSYI
IDRVVAQAYSDLANLVETLPSQNDQARKRAIVDYVLQTRRQVVKLLVLARWSTEAERIQR
AMNIVGFLSMQNHTLESTITSLTETRTMLSGARVRNYDLSTALAVLSTGTYTGLPASMRE
GFEEGAEKMGDEEVIDTLREVDEVIRWRLVMGKEYVPKEMRRRIWRVGDGRVVFGVEGLW
EASFTYGGGKEDPDEDEDDERAEEGAEWFLLGVKFLFRVKDARGVWSSTPLGPLKDHLID
LCNRQLLRRPYLPPSPEPPQPPQPHIDAPPPTEADANREEKEKKWNEERREVIKKRRRDR
PLNRAYTFLQRLALSYQLEAVHSSAARLAQTSWKGSLRVERAGQEREEVRVEYWSYRPDG
STTARQPSSTASRPGPGGTIIFSLRTPSPSSSSADAPAAPPPSSTSRQSVRERALRAALA
KASSSTLPTPTASDTSPATEADDRPSDPDVPSRLSVTWLPPSSYAPSSASLDLSALLGSD
LDVEAVIRQVTARHARETVQRLAEVVVGQGGEGAKGATVIYPKKRNDGDGAGTGDEAGEE
VPYLHFPLVGPHAVSAHIVPTTGRFEFRLASASAASTGGEDGGIEEGEGSAAREQRLRLA
TERIEKERYGIAQPGQQANATGEDGWMRAVVDVVARIRASTILDDLETLVSLLSLPLASP
PTRRLPLAPREYSKLGPNPAALTGRAAHLFIPLLRSTSGSMKDWFVVLVLFEEGVRAALV
RTEERSDGMGSWLEIGEVGWIGGASAKAKGKERAGEGGVETGVAGTNLGYEIKAETLRSL
WWHCVHRVALFKVEQQVHSRRIPYRLVDPSSANSNTAPSPLFAKPPKAAHLAVQPAGLLA
LSDAAKIADGEGAVLCVVGDGGLLRTTLHVRLRPTIASSLFSPSTKLPPNVLFNPSSGVL
ILATEDDLDGAFERLLRAYAILARALFDAYRARGRTDKRPSATAASPKKTAFAQQINGLK
PGG