Protein Info for mRNA_4967 in Rhodosporidium toruloides IFO0880

Name: 13335
Annotation: K11593 ELF2C, AGO eukaryotic translation initiation factor 2C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 930 PF16486: ArgoN" amino acids 38 to 193 (156 residues), 50.3 bits, see alignment E=7.8e-17 PF08699: ArgoL1" amino acids 208 to 251 (44 residues), 32.8 bits, see alignment 9.2e-12 PF16487: ArgoMid" amino acids 486 to 542 (57 residues), 31.4 bits, see alignment 3.7e-11 PF02171: Piwi" amino acids 586 to 891 (306 residues), 255.5 bits, see alignment E=1.4e-79

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (930 amino acids)

>mRNA_4967 K11593 ELF2C, AGO eukaryotic translation initiation factor 2C (Rhodosporidium toruloides IFO0880)
MEALTAEFKSLAVTSLGDPGQTGVVLAQRPDKGGTLGRPIPLVANLYRLKFKKAPSISHY
DITFIEVRPEDAPPRRSGNGPPPTINRETSIAIWDALVAMNPDNLGERLRQAAFDCCKNA
FTLGRLNIPDGTKTYRIELPAESATRAPRQFDVKLSLAQFLDLSILDTFCQHKHAANLSD
LAATAIMALDVLLRHGMYRKQDYVVGGAGRKFLNKRASTPLGQGGELLAGLFQSVRPTVS
GMVVNLDSAYSPYIVTGDLLSVCNAIVGRQQTQGGPPQRGGRGGRGGPRGRGGYPAAGRA
LPANVSDQEIRELKRKLGNSKVRVTHRKDTRPFTIVGFGQPVGRQVVSIGDRSKKGKGGA
KPTAKEAAAAAALALPEREKMPQQTMTVADYFAKTYNMININLALPAVELRGGQFVPMEV
LELLHGRIIPPTQLTAQQASAMINTAAKPPAERRADIDQIRKQAEFGPGSRPNAWGLDVS
AMPNVAFGSWNLVESRFLVPAPPLVHWSVAVFAPEQYAQRPALQNFFGMLIQQAASRGCQ
IKIPADQQLKVTYWDGREDRLSTLKRAANLVMQNNPQNKAGQPPQLIFCILQDPKAYDDI
KRKSALELPVAVTTQCCLLKNIFKPRGVDQYCGNLMLKINAKLGGINSTVDQRDLSASFP
ARPSCSAPTHPTGAGTGRAGAEVPPSIAAVVAAVDSSNMKYVAQVREQEGRKEFITELSS
MSETLIRTFMKNTKGRPDSIIMFRDGISEGQLAPCVHAEVSQIKAACCKIDVNWNPKLTY
IVCAKRHHVRFWAQNERDCDRSENLTPGVVVDPEIVHPYIFEFYLQAHAGLKGTAKPTRY
ICLLDENGFTSDKIQKLVNSLCYSFARATRSVSLVPVAYYADIVAGKARSFVDTDDASTQ
RLAQEAKKRDSRYIQDKLDRSTFGQSMWFM