Protein Info for mRNA_4968 in Rhodosporidium toruloides IFO0880

Name: 13336
Annotation: KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 784 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 606 to 628 (23 residues), see Phobius details PF10165: Ric8" amino acids 99 to 733 (635 residues), 266.8 bits, see alignment E=2.2e-83

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (784 amino acids)

>mRNA_4968 KOG4464 Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) (Rhodosporidium toruloides IFO0880)
MPASTPPHFLQQAMLARLASANSPAPPALADFLKLSQDERSRPESASKLAAVLQALSQGY
DPKPEERRKLVAALLPLALTLLDQPHHAQNPLFAPLCSLLKFVGRSPAGTEELARADGLR
VLVRLGGLDRVAGLPRVEAVEGEEEDDDEDEAAKRALEAGEQDPLLPAESEALRCLANVL
TLHPSARDAFPAVLLEDGERKALKGLVRILACDGAGFLGGRLLFLLTSKASEAVTELVLD
GACVETMQQFASRYLAIYRSETHRQSLATGPPMATYDDILREHLKLAYNLMLQYSRSPAT
LPEGFEKTGSLGGDGKKRRFWRSREKSGASLTSSPELDKEMTGGEPSSSPEPAKGTDSPR
SKSPIAIAKRVGEAVKRSSRTNSPARSPETSTTTAPASTSKEGDALSLTAAHLFLPLFRP
YLSIAVTLPLFPPTSAFSPTAASKDPSPLVRAALNTLLNFPVELEELSGWSTSWLQYVPP
RVSPDDGMVRKGGGIGSLGERLLEVLQNVCDAYFPADKVPEHPRLVTKRDKEAGRKLEAP
CAPDEWLSGGDDAAKVEEILGPVMLLMRQLSMLGESQFVFRELLFPPDIDRSVPLDRQPT
LTGHLVRLLSSVLLLNTAFGVGEFLYNLFDRSPEKLVRAIGYGSASGFLQNRGELIPPPP
GEEQESSADGEQPRRPVNPITGAFEPPEDPDYKPMTEEEKEREAERLYTLFDRMAKTGVI
SAENPVDKARAAGNLEESKEEREAELERLRKEDEELEREVERDMKEWKEKRRKATEQGKD
PAQV