Protein Info for mRNA_4977 in Rhodosporidium toruloides IFO0880

Name: 13345
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1617 transmembrane" amino acids 660 to 677 (18 residues), see Phobius details amino acids 1592 to 1608 (17 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1617 amino acids)

>mRNA_4977 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MGVRDLWPLIKAVGAIFAAGRYQSWREAGVLVSAILQQSATSLLLVDVSSVLGSLHATRL
TRLLDQDRLGQRLAQEQKALVLESTEALADLVRGIRALCPAVQIHLVFDGMGRLAPKEGE
IRTRDKSRLTLLLDELLQRARHAASKGKRHTPSARRLLAAFGIVWDVEGGRMRVASNLDE
LAGYETICGLQRVTAEDIDKLASPFPSCSAIAALTYSFHQATEASRYLVSSCTLVTAASD
ADWHVAAATRQAVSPSSSATPADPGQTGVLTPSQHIAVLATLSLTAGAVATASNDGDIVT
GSGSSHSTLHVRLQSQQVEVVDRRLFEQRLGLDAGGVAGAKLSLTLGQDFVGSGVQQIGL
ATVCRMPPSLSAWIRPDWLRLASTSTTTSIDDVWSTGSALLARELRGITPRAPWLAELRA
FCGATPAPPSVDRRATSIKVWQELLQQRFRSSTPLAPPPAPCSPTSSPASTRRPAPTTPA
TVASTTPPAASPPAPLSQPTFARASPSNPRRFFHNIALAPNSSSQEPHERISEPPKVPKP
SVQRPRHPLIQTRIYPQAPTLFEQFCDLTRPTGVQCDGPPPKKKMRLQTKPLKGQTVAAL
EAAVGETKNEDLAGELEGAEGDSPVTEKGGYPLRLSCPLRTRNLDLKTVFVDEGMQQLAT
FVRSTFGAVLPLYLSCLAKQMRLQRRLANPLSPGLLEMTANPRAFATVLERVALFSLGGG
ATRPAKYQLSEEETLFQDLGLRCLFGEADEAGELDGTPDLQTRLLVQSWRDEPVEIRQLI
ISKRVLLSDYRAATYTSSLFAIPDRIKTLLLSPPGRAILSDFSTSFAVNAWNRQQNLHNN
FCRIVLSWLSKPFATLSTIQHVGRLILDGLPPGFCTISFEPTLHEKPAIAAVAAAIAQQP
RLATRLANALVTVLAESTKIRTAEAPAASDLIPKLAALDDDLRSALASVGISAPILAASL
GTIRRTLAGLMACGAAADVIDSYTQSRRLDSPLSLDDRHASLAILLGRGVLSGAGSASTW
TLEECLKVVYSRLQMEEAAEEATARGRQGGSIAAGLEGEVAGVRSTSLAAVLELVADSLE
VQGPVFDARGMVMLPRYTPVAAPGLASLAYAAGTGDLDVLQLAAEFHEYLARLAERLSQR
GVPVDVRQKIAVFFAEHEAFLRDIAQARVDLSRTAKDIYQLVKGSMTNFTPCQLMDALSS
CQIAALAAIAPNVAAKTGQVPHGRLALGPLRVSVTIVRLDQVPDSIRTRLLGNAAQGASV
QKLIEAAASDGKRAQALLAGLARLPDRERPASPASAPNHTTRDDAARSACADALRSNIFS
HLPPKVLGRKVLTATPRSLAKPPIPQLPSVPSATWPSALATIRQHLGLRPDGSGSPVKGA
VLVSLDPSAKVVVDGQSEIIGEPGSVRVARARDAVFLTLQRKLRCEREVELANMRARGAG
EEELAMAGLRMREKEQRIFQSYEDQVAQQLVDWLVPPSSVARPVVLAVGDGVLGNYTGQR
GAKVADPIIQRMIHVAENRPDIKLLVVAVPEAHTSSLCIQLACRQLFATKLFKFRFRDRK
SSFPFQRLLHCPHHGLTAHRDDVGAANIGSNLVSLALFGVTALSKAFAEMFSFPWFS