Protein Info for mRNA_4986 in Rhodosporidium toruloides IFO0880

Name: 13354
Annotation: K17943 PUM pumilio RNA-binding family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 949 PF00806: PUF" amino acids 625 to 654 (30 residues), 27 bits, see alignment (E = 1.3e-10) amino acids 662 to 694 (33 residues), 26.9 bits, see alignment (E = 1.4e-10) amino acids 736 to 766 (31 residues), 27.5 bits, see alignment (E = 8.7e-11) amino acids 777 to 802 (26 residues), 24.9 bits, see alignment (E = 6e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (949 amino acids)

>mRNA_4986 K17943 PUM pumilio RNA-binding family (Rhodosporidium toruloides IFO0880)
MDPSNTSGKPLSANPRHLGLPRRQSFDPLSSSNKGALSLGTLPRPSFADLPTGLRSVPAI
ESTRHLGSAFRNVSAPFGDGQRTPGGSLVIGAEVFGFGKHLPRELERRAGHGGPASLDGL
DDGTAASRLTSDWVTGFGAKAASSTDDLRLHLTDDSRGLRGLDRLSGDFTSGFARSQLKP
TGSAVDLRSSSPASMTDSLRAPSRSSLLPPSSHLAHSPVDASSQETSPVGSSGAGSAPTT
ATSIQLGAPSPTSYGAAAATGSTPSPGSAPYTYPYQPPDPSPPPLGNPYFAHMGGVSPPP
AGYPPRDSRAAEPMYNSFGQAVTGAQSVEDDLASGLRGINLGGGGGGAAGANARGGPRSP
YAGEPFGNFPTTAAAGAGAGEGPREHPGRQNSISYPYYLPPGSPYMSHQDSYPPPMSYAP
MGFYSPDAGAGGPGGRRDSIAPAWGLPMPPFALPPEFVNGSPSAVPSRQGSFSFAPSGLP
GRPGAMSPYAPGPPPPSNGFANGHPPPPPPSHLEHGGPPPPPPMYGGPQLGQQHQIILGR
GVRGMEYVAPGPVQPHGYGSGYGPDMRSLRSPLLEEFRSNRNRSWELQDLAGHMVEFSGD
QLGSRHIQTKLETATTEERNMVFKEILPNMLQLSTDVFANYVIQKFFEQGSQVQKTAMAK
VLEGHVLQLSLQMYGCRVVQKALEYVLVDQQVRLVKELDGNVLKCARDAQSNHVIQRALE
RVPPEHLLFITNACVGEVHSLATHPYGCRVLQRIFENCPAHQTRTLLDELHRSTQHLIQD
QYGNYVVQWVLEKGDTADRSLVIAKVYGQLLPLAQQKFASNVVEKCILYGTDDERRRLID
EVLQTGHDGSSTIKAMLVHPYANYVIQKCLHSALSPQREALFAETTQQILNLRKYSTTYS
KHLVTIERVLSAERETNGLPPLPGFHHGLGPANGAGHMNSIFIPHPTAA