Protein Info for mRNA_5002 in Rhodosporidium toruloides IFO0880

Name: 13370
Annotation: K02981 RP-S2e, RPS2 small subunit ribosomal protein S2e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 TIGR01020: ribosomal protein uS5" amino acids 32 to 235 (204 residues), 314.2 bits, see alignment E=1.8e-98 PF00333: Ribosomal_S5" amino acids 79 to 143 (65 residues), 98.3 bits, see alignment E=2e-32 PF03719: Ribosomal_S5_C" amino acids 162 to 233 (72 residues), 78.3 bits, see alignment E=2.5e-26

Best Hits

Swiss-Prot: 73% identical to RS2_URECA: 40S ribosomal protein S2 (RPS2) from Urechis caupo

KEGG orthology group: None (inferred from 82% identity to ppl:POSPLDRAFT_126548)

Predicted SEED Role

"SSU ribosomal protein S2e (S5p)" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (258 amino acids)

>mRNA_5002 K02981 RP-S2e, RPS2 small subunit ribosomal protein S2e (Rhodosporidium toruloides IFO0880)
MSAPAGERGGFGRGRGGDRRGPRRGPRRGARKDEEKEWVPVTKLGRLVKDGKIKSIEEIY
LFSLPVKEYQIIDILLPKLKDEVMKIMPVQKQTRAGQRTRFKAFVAIGDFEGHVGLGVKC
AKEVATAIRGAIILAKLSVIPVRRGYWGNKLGEPHTVPCKVQGKAGSVYVKLVPAPRGTG
IVAAPASKRMLQLAGVEDCYTQSRGNTSTMGNFIKAAYAAITATYGFLTPDLWTKIEPSP
SPYEEYSSHLQLAAKKVY