Protein Info for mRNA_5010 in Rhodosporidium toruloides IFO0880

Name: 13378
Annotation: K17576 PPP1R37, LRRC68 protein phosphatase 1 regulatory subunit 37

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1559 transmembrane" amino acids 736 to 751 (16 residues), see Phobius details PF02114: Phosducin" amino acids 104 to 249 (146 residues), 54.4 bits, see alignment E=9.3e-19 PF13516: LRR_6" amino acids 1094 to 1115 (22 residues), 13.9 bits, see alignment (E = 4.7e-06) amino acids 1121 to 1135 (15 residues), 10.9 bits, see alignment (E = 4.2e-05) amino acids 1183 to 1203 (21 residues), 13 bits, see alignment (E = 9.2e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1559 amino acids)

>mRNA_5010 K17576 PPP1R37, LRRC68 protein phosphatase 1 regulatory subunit 37 (Rhodosporidium toruloides IFO0880)
MEQMFLDGTHPALQRDADAAATLRASSPPRSRSSSPTPRSDDDEDGPRFTAIDPDPPKGG
EMPSRAPGGGKRGQSRNTGVKGVRADYKEAQRAMQNGNGGVNGLAEKVRTKMVVSLDKEE
EEDDELAELRRKRLQELQMQGSGERRGSDALGNRIFGHLREVGVEGYVNAVEEEDEDVAV
VVHLYERRIQICELLNTHLAHLARLYPSTKFIRCVASELDFMSSDIDASTLPTILIYRKG
DLEATWVRFDLELPSGEIRDGDRGRKEVEEFLAGCVAKPQALWTSMSDAEAAATPAEVDA
ADSAGRVEEDTVRGVERRPDGGDEHSTGEEAGSTEGTASESEPASAAGSSDGALPADFAV
SLAPSDGAGEVVSPDSTKASSATNDTATTAVTPAEPVTSHPPPPRRRRLPPPPAKGILRP
PQSSHAASSRFSFRRDILQPFNSSYVRAAGVAEGQASTTGGNPPAGATGVGEAVGNAAAT
AGGFFGNALKKLSAAAAAAGATTIAAAGPQPADQGKVQANGVRAEAATASQTKQLPPTQP
NASTSSVATTSTAVSTASTAVASPPSSQQPAPPPQPSHPLPVSSLKLVRFRMSSLKVVYP
INHGTLEAIAPEEEGATRDRIEEEFRAKKGKGKARVADVPSDEKAAEEEKKVWTGEELGR
LYAECCRTREEPGIERVKRAFRENPTAPPKALDLSHEFLSHGAVEALSDVLSVDWGCKKL
VLEGCGLDDESVKPLLHALLVSASIPTVSLAGNKRIRNRGWKLIAVFLRKAKFLRYLDLS
ETSIDRRAAEWLVQAITPQPVVPPVPPQPSLPASPASETGQNEAMGKKDLSKKVGGLWDD
DDESDAEDGAQPKGAAKEANAAPEGESTQEKAEADEQVVPPPPRDPLFDIAPLLKEDWSS
EPSTVLSLRMENCGLRGPALEVIANGIRSSQIKHVSLRRNRINAAGGVALAAIIRDYPVS
SDPSSAFSPSPASATPFSASLFGHSNGSNDSLSTASPAFEAGNSVTARPQHRDSDGGRHR
PSSSTTLLSAELQDGQERPAAMTEREVFRLSEARARLRKQIDGLPRIGALLTLDVKGNDI
RNGVTYIAQVLKRNRTLKVLNLSENRIDVQGLIVIGEALKYNTTLETLDMSHNPCCGPTI
EGIMALRSAMMVSPTLKRVFLNSTDLTSEGAIALAEFLPEARSILHLDLTSNQIDISGVM
ALAVSIKLNSTIRCLDLNIPFDDPDFSRFSQEILLQCVRNTELAQAKADEEARAATDGSK
RVVVAQPIRKSALASSLEARQAAEERQERRRQAALRTQKDIFAAAAETRDVVAELLAVDQ
QAAAKGIIVAPSEVVRDALLQVQLCEAQLAEAFTGARQGEERERAELLITELSSLLDLAK
SLYDKPPPSPQQNGAGSPHLQVPEGSLAADVPPSSSLTFSLQDSDSDDDAAAQAAMDKNV
GDDAAEQTLEVDEASSSSDSLRSPIQSESRAMVMEESEVFRKGVALGVDDVPSEDEEDDG
EDGEERKKQSEVSGEELRKEILETPVTRSPRTSFSDVQDKPRIDRRASDASDRSTVSDS