Protein Info for mRNA_5012 in Rhodosporidium toruloides IFO0880

Name: 13380
Annotation: K01886 QARS, glnS glutaminyl-tRNA synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 825 PF04558: tRNA_synt_1c_R1" amino acids 11 to 169 (159 residues), 129 bits, see alignment E=2.7e-41 PF00749: tRNA-synt_1c" amino acids 256 to 564 (309 residues), 334.4 bits, see alignment E=8.5e-104 TIGR00440: glutamine--tRNA ligase" amino acids 257 to 820 (564 residues), 631.3 bits, see alignment E=7.9e-194 PF03950: tRNA-synt_1c_C" amino acids 569 to 743 (175 residues), 104.8 bits, see alignment E=7.6e-34

Best Hits

KEGG orthology group: K01886, glutaminyl-tRNA synthetase [EC: 6.1.1.18] (inferred from 54% identity to cci:CC1G_01376)

Predicted SEED Role

"Glutaminyl-tRNA synthetase (EC 6.1.1.18)" in subsystem tRNA aminoacylation, Glu and Gln (EC 6.1.1.18)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.1.1.18

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (825 amino acids)

>mRNA_5012 K01886 QARS, glnS glutaminyl-tRNA synthetase (Rhodosporidium toruloides IFO0880)
MAPAALSPEMEELAAFFQRAGLSEQRAKETARSKTAPAARSLFEAARLDTSPLEDKQGAL
VLQVAKDGQALSDEARLYIVEAVRDGRLSKSDQVTAAIKFMGATVPPVDQAAFDEACGVG
FTITPDELDRRVHAYLTTHDAEVSKTGWGGFSKTSGLMRQDDSLKWVNPLELKASAEKAF
EEKFGKKEDAKKAQAEKAKKESKAPKASTSTASLPAAESPDDMFKQGWLSRLHRPGGNEQ
PIAERMKEHLAWTGGKVFTRFPPEPNGFLHIGHSKAIAVNFGYAKFHKGHCYLRYDDTNP
EAEEQIYFDKILENVRWLGYEPYQITHSSDHFQELYDLACLLIKKGLAYTSDDSAEEIAN
QRGGKDHGPRYESKDRKKPIEQSLAEFADMKAGKYKPGEMVLRMKQDMQSSNPTMWDIIA
YRVLGKPHHRTGTQWCIYPTYDFTHCLCDSFENITHSLCTVEFIAARTAYEWLCDALEVY
KPRQSEYGRLTLEGAITSKRKLLKLVKEGHVNGWDDPRLHTLVALKRRGVPPAAIITFVS
SLGVSTQNSLVQLSRFEQTVRSHLEMTTPRLNLILRPIRVTLENLPADFFLEVEKPLHPK
DPSMGTARVPFTREVFIDADDFRTEASKDFFRLAPGATVGLLNVPKPISYVSHETDPATG
AVTHIICRYDEDVKEGFKPKGWIHWVASSAAHNSPVKVKETRLFSRLFKSDNPGALGDAY
LDDLNPESLKVVEGALIEPAVWDVVRSSLKRANEVVELRKAEAAKNGTEAPPSVDGLEVV
RFQANRVAYFCLDADSKLVEDGAKDGGELVLNLIASLKEDKGKGR