Protein Info for mRNA_5024 in Rhodosporidium toruloides IFO0880

Name: 13392
Annotation: K11124 SMG6, EST1A protein SMG6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1482 transmembrane" amino acids 842 to 858 (17 residues), see Phobius details amino acids 989 to 1007 (19 residues), see Phobius details PF10373: EST1_DNA_bind" amino acids 710 to 814 (105 residues), 43.1 bits, see alignment 3.9e-15 PF13638: PIN_4" amino acids 1295 to 1469 (175 residues), 71.7 bits, see alignment E=7.3e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1482 amino acids)

>mRNA_5024 K11124 SMG6, EST1A protein SMG6 (Rhodosporidium toruloides IFO0880)
MTTAAPLHPPSLSMRTNDAQATAGHASPTKHRARLNNPAALIDGWRQTLRSRSPAEQATP
TAQPHSPVRGQQEYVQGQYGAAGTCAGAGYGGPRRVPPSVVSSSNRLSTNPSLLSLDRPA
SPSTTVDPYGAPPPSSPRYAAPSPPTAALPAPGYRHSSHAPQPAYQPAFSHSNRSHASLP
PYASGSGGGRHPFAKSHQHAPPAQHPHQRPGRYDADYDRSLPVSAPSATSSGGATAGPSR
ELYDPRSPTFPSPTQAPLPPPVPPIHRSSRTPAAHPSDSAPRHRREREVREDGGLGSSSS
RRPARSKREAVDPADLGRRAGAGASGSRADAHAKDSKESLESVETDFSGRTRSSGRQRRR
RREGDEEAEGDGGAGGAAGRSRQLFDPRKDDPMRFTQAAPAPSGRTKDVRSLANGSVLSF
QSSMSDVMASPAGGSDYTAPGGADDGASILTGGSARSRSSQHPALAHIKRLYKEITTLEA
QLQEENRAAQAAASRDAEGEEGKAAGVRIQGQAKRFDDEYWVKLASRHKQLVEAHFEFLK
FALDPSHPASFHSLPQRYNIPTRLWQTAFHQLLERMRHAVLASPFRPDSASSSSANVLEH
LIEYCQWAYTFYSQLLDEPLVASLQAAWIEQLGDLARYRMAVAGLASRVHAAQQQTLAPA
SLTVAALDAHEKGEAEDAKPPRPADAASIGQAALNDWDLEEQETWREIAKDWYGQGLAEN
PGTGRLQHHLALLSKGDELRSLYHYCKSLTAAHPYVSARESILPLFEDEHQARRTQPDVT
KAELFVHLHGMLFTKISLDDFDECLERFVERLKEEGWALNKAKEDWTSMEQDANAPFGDR
EWFMLGIINIAALLQYGAEDGVLRKLMNRDSSDAPEAAGSSRRQGQHTSNRHGASASNNK
TRLAPQAIMVKRAEEPVQSSAVSDIGDDTERASSNGTAIPGEDVVKQLNAPVPTSPEDDP
LPFKLAQRLAFSLLSVALQEPFRRLATTTIVNPYVTVFLTFLAHLSFHPAAFKHIERAVP
WQQLAELFGRIPPVVEIRLETPAKLVGGKPLPEDWCIRGMDWAGRQLFGRGYWREHRHRS
APEVAGLPPPIEGVEGTTVRVESEMDALKFDLAALDDVTANSTTDDDYAVGQAAPSGEAY
RSLAAQLAEGRWRRLAICAAWMVRNIPGFDFDVRAMDLEQRFRVSGVLRDKVERWRQEDE
DAREAERLSRLALEDKVGSAGSAEEDGDESDDEEDFEDENDSEEVKELKARRRQLKAIIR
QARSATRSSGKASLKVKLGGKAASQPKVFPGYTILVIDTNVLLTSIKLFSELVAAECWTI
IVPLAVVTELDGLKRNSTPLGVAANEVIDYLEQAIRGYSRFLKIQTSRGNYLKDLAIRNE
SIDFRGGADSSYEGGDYGSSNDVARTMDDVILRAATWQKDHFTNRVALVNPRAIVDRVKI
PSDAAQVVLITFDRNLRLKARARGLDVTDEKGLKKSLDAAGG