Protein Info for mRNA_5031 in Rhodosporidium toruloides IFO0880

Name: 13399
Annotation: HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 PF00989: PAS" amino acids 516 to 604 (89 residues), 32.1 bits, see alignment E=5.1e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (627 amino acids)

>mRNA_5031 HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785 (Rhodosporidium toruloides IFO0880)
MATSASPPESAGTSGGGPPGFFTSNRPAGSAASRYPTSQSFLPPIQPAPAPSTSSGRGGA
TLLSDEEDETDSTPGATYVPPSTQSHSFAPPLQPIAPAPPRSGSVKPRAGSVASSVGTPG
GSAKGKGKAKADGEKTAAGGKKASGKGGKRGQQVGPDGKPVPKKKKAGRACAACQKAHLT
CDDARPCARCVKKGCPEDCVDGARKKAKYLQEIPDELLERGRQHPPGTGPPTATTPVPAA
APSLPQQAEPNFFQGSPPFSAAEAGPSQPMLAGVSQPTLTTEPQPQPFFDFSSAPPVPSN
SAAAAYDPSSFFSFPSISAATPTATSTSLANLFNDSTQFGSEAAGFEYAILNAMLNGNGF
ATDTNTQPALGGINGADEGFKQGREDPMLLDAGAAGSGAAGPSLVDGEGVAPNGAGNAFG
DGMDGAYGPAKAQQPGVLTAEEAYRSVTKPYPYAQSYHFLVKHLKERFEKNDILRIIRAL
ATFRPSLIALQMPLTEEDETFVERTFQRTLVELNKLISFSGTPTVVWRRTGEICLVGTEF
CLLTGWKREELVGKKYIFELFDTASVVEYYESFAKHAFESTATSITMQCVVLAPDGRPVP
CAFCFSVRRDLFSCPFLVIGSFLPILV