Protein Info for mRNA_5033 in Rhodosporidium toruloides IFO0880

Name: 13401
Annotation: KOG4436 Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1341 transmembrane" amino acids 1161 to 1172 (12 residues), see Phobius details amino acids 1236 to 1259 (24 residues), see Phobius details PF00566: RabGAP-TBC" amino acids 1083 to 1275 (193 residues), 86.8 bits, see alignment E=8.5e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1341 amino acids)

>mRNA_5033 KOG4436 Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) (Rhodosporidium toruloides IFO0880)
METQRVHHPNTPETKPLATTPTFPLAPLELQRWVRFAVKGGIGKAVAKVDKASEDGVRDL
MFLEGDTVTVLMDLGRGSYLGYCEGVVGLFSGAEVVMQQAKLKRPVISTRSASASRANPL
PPVTPEIGAASPVLPPIPTESSPEIPPPVPSTSKPTIARSDSIDSTSSSSSLTSPRKPRR
KPVPALEVLSDQPSDFGRERGDLRSRRRADVAGLGIAVGSGGLSRVAPPPRPRRLSENEQ
EVLASTEPPRLAAAFIPAPSPVLPRTSPFPLYRPAAASPAPSSDSDGTNRTPSLVASPYS
DLADRDRDFDDSASSASGHGYAGVRRVAPFTPEDAGGQVWTGSESVDKADGSAYLDAYGT
PGKDYTDGPTPTAESFPLDAFPLPSASNALFGGLPHDAPTPYSSPTVPLDEVRPSPSHVL
STSGMPLPVPSADPQSAFSFSPNSSITSTLPASVLSAGDYYARREKSSDGSSGGSVPGTP
GDDPTLAFIFDSYRYSRVPSVGSLAGVAGGIGQAAIPAPGLERRSSQEVEELVGEFAPEA
EKEEVEPALRTFGAATQLRSRILGGQPPAADPSSAVRPAHTPKNSTSSSVDTANIPRLSE
IFPRMSPADSPAPASVRSSRSGSLALPYDSSPARPTQNLPDRPPVSPRRQSEPQIRRSAV
PVLDAAGLREDLDASRRLFQTYFTPPRELVDAAAAITGTAPAVPPSPSSMESPQRLRRKS
VKGLQISQPVVPALRTQNLPTSPPLWRSHDDASPVEQVMPHETTDVFVASPVSIAAPPPQ
VQILQATPSAVRTYTALRERDISVDSDSQYVLSPVPSSSAASSPNTFTSVASSPVPPSVN
DGNERASTSRTADTTPKKLRKGVHRTKSSPAIGRHSNSSTTSLASPVMPSGRPQMPAMPV
RKMSDPFGTPSSPASPASSSERKVDYSTGISNRDFEEETIAIGKSEFEVVKPLAALLTKD
DEEPVAKSASFDSPRPSMSSSIASDFATPRRPLPPPHSVTAPYPPSSASATPYMTASHAR
SVASLSHFSPPTPASVEDGGRAALDDYRAKEAKWLQVMSTMTVAQARKSKKVKALAQSGI
PSSVRGKAWAFLADAQAELAPGLYQSLAQPSFPLPPAIEEDMQEVLDLPQFGEGSAGRED
LVSILRAFLRFDRQLGYYRGLASVVALLLSQMPAETAFGTLISLVKNYSFRHHFPTGVEQ
LRLDVLAFDCLFEAEEPKVAKRLNELGVSARDYLPFWLPTFFLTILPHTTVVRLMDILLF
NPKMRYRIPLALLDLSHLDDRLTFPSRDAVLNHLLAPPPTAFEPALLFPAIAHIKLSDDK
LKKAQKKAAQVMLRPQQRQAA