Protein Info for mRNA_5044 in Rhodosporidium toruloides IFO0880

Name: 13412
Annotation: K04717 SGPP2 sphingosine-1-phosphate phosphotase 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 38 to 61 (24 residues), see Phobius details amino acids 70 to 85 (16 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 195 to 217 (23 residues), see Phobius details amino acids 267 to 290 (24 residues), see Phobius details amino acids 427 to 446 (20 residues), see Phobius details PF01569: PAP2" amino acids 70 to 184 (115 residues), 59.2 bits, see alignment E=1.9e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (452 amino acids)

>mRNA_5044 K04717 SGPP2 sphingosine-1-phosphate phosphotase 2 (Rhodosporidium toruloides IFO0880)
MPGWRFWIRQKLMQRLSGEMETLQGIQTRWRTPFRDEYFVKTSLLGTHTFFMIFLPLWYW
FGDAHIGRGLLHVLAIGAYVTSVAKDAFSVPRPYSPPIVRLSVGSHALEYGFPSTHSSNA
CSMALFFAGLVLERWEGHWAVSAGAVGLAAFFAWSVTFGRLYTGMHSMTDVAVGSLIGIL
IFTLHRAVLPFVDPLIFGTTWKATLASIPILLALVTFHPEPAEECPCFEDAVAFLSVVQG
VTMRDAYWPEGFASRTYGHEWRSGSEVGVWAASVLLKLVVGISTILVWRIVAKQVCHVVL
PPLFRFFAPLIRLPRRGYKPATEYEAYPPTTSLDPVPSILDLPSLVDEAEVSPSLSRGAT
SSLSSSLSNGKDLRNRSSLAPPAPGSLEAPPLHKTGGTAAAPHRSSLSTAAAGESGHLDA
DVLTKVVVYSGIGWLASAGIPGAFELYGWSVR