Protein Info for mRNA_5057 in Rhodosporidium toruloides IFO0880

Name: 13425
Annotation: K03252 EIF3C translation initiation factor 3 subunit C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 834 transmembrane" amino acids 569 to 578 (10 residues), see Phobius details amino acids 676 to 694 (19 residues), see Phobius details PF05470: eIF-3c_N" amino acids 22 to 589 (568 residues), 588.2 bits, see alignment E=1.7e-180 PF01399: PCI" amino acids 624 to 729 (106 residues), 56.9 bits, see alignment E=2.7e-19

Best Hits

KEGG orthology group: K03252, translation initiation factor 3 subunit C (inferred from 57% identity to ppl:POSPLDRAFT_124151)

Predicted SEED Role

"Eukaryotic translation initiation factor 3 93 kDa subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (834 amino acids)

>mRNA_5057 K03252 EIF3C translation initiation factor 3 subunit C (Rhodosporidium toruloides IFO0880)
MQQETKKPARSRFLRSEGAAADSDDSSDDERAKVVKSAKSKRADEVDASVKTIENGVKIN
DWVTISNEFDKLVRLAARQTNTAEPIPVGFFKILSSLDEMVASAQGNRKKMNATNAKALN
SMKQKVKKAQREHEGQLNKYRADPEEFERSLNAPAVAAAAAAAAASAPKKKGPMAVAADA
EGDDDGFETVGAKGAKGAAGAKEPTSSEGIYKALAQVLEARGRKNTDRGEQIRTLEGLLK
VATTTYQKVRVILALIASHLDYNLATSAYMPLESWTAAREQLDALVAILTEDPSYAVREN
APDYDDQVERAPSQDEPVVVVRGSVVSLVERLDDEFMKSLQNLDPHQGEYIDRLKNEKVI
YATIVGAQVLFEKTGEREHLDRTVMRRLEHIYSKPDLVTRALEASLPSVASKSTIWASQV
GTSTESSFSALALVRALCIRLYKTDNSLLRTRAMLSHIYHYALHDDYYTARDMLLMSHLQ
DTVGNADVSTQILYNRTVVQVGLCAFRLGLIREAQSTLQEIFATQRVKELLAQGVQAQRY
TTLTPEQEKAERQRQVPFHMHINLELLEVVYLVSSMLLEVPLMAQAGSDPEQLKKKVVSR
TFRRMLDYANRQVFVGPPENKRDHVMQATKALQQGDWQKCVELVHAIKVWSLMPNEKDVK
DMLARKIQEEGLRTYLFTYSSIYSTLSLAHLASIFDLPLSTATSIVSKMIWDETLAASLD
QVAGVVVLHHAASSSSSGSVAADGGELSHLQRLALQLVDRATQLTDSSERYLESKLSQGE
QRADGAGEITAAAGTGSSASGAGADGVDVEVRDGGRGGAMGRFNSGALGRTVQV