Protein Info for mRNA_5060 in Rhodosporidium toruloides IFO0880

Name: 13428
Annotation: HMMPfam-Glycosyl transferase family 2-PF00535,HMMPfam-Glycosyl transferase family 8-PF01501,HMMPfam-Glycosyl transferase 4-like domain-PF13579,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF53756

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2018 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 122 to 310 (189 residues), 53.2 bits, see alignment E=1.3e-17 PF13439: Glyco_transf_4" amino acids 122 to 312 (191 residues), 48.8 bits, see alignment E=2.1e-16 PF13641: Glyco_tranf_2_3" amino acids 553 to 681 (129 residues), 33 bits, see alignment 1.5e-11 PF00535: Glycos_transf_2" amino acids 554 to 694 (141 residues), 80.6 bits, see alignment 3.2e-26 PF01501: Glyco_transf_8" amino acids 1084 to 1338 (255 residues), 34.9 bits, see alignment E=3.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2018 amino acids)

>mRNA_5060 HMMPfam-Glycosyl transferase family 2-PF00535,HMMPfam-Glycosyl transferase family 8-PF01501,HMMPfam-Glycosyl transferase 4-like domain-PF13579,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF53756 (Rhodosporidium toruloides IFO0880)
MARWRVPRRALRLLRYIVIAAALCAACCFSRICQPRWEHLDATSSLVRQARQPVDFAWGS
ILHRFQNYPRRARRRGLHPWQAEGRSREAGVSLASQVNPARRNKPIRVLIVTSEFAGLHK
NGGIGTAFSELAHTLAAAGGGREFETSVLLAHTEDVFPVQKREQVREELASKGISLLFVE
KEPRPFFPQAWTPVAAMRVWRYLRSRDGSFDIVHFPDNTGIGYFASLGKLEGLALRETKL
VVGLHGADVEWAAMLNKRYPIDKYAVDLGVFERRTAEWADAVVAPSEYILEYARQRGWKI
PDDKALVIPNIVSVPAIAPTPTTNGRQTRLSTASSHVEPVRELVFFGRLEERKGVRLLVS
VFESLYTTEPLSPALATIEKITFLGRDQTHLATRTSISTLIKGALDAILQYTNATFSYDF
LTTYDRDEALAYLADPSRLALLPALADNSPSTVLECIAHDIRFLASNIGGISELVHPGDR
DRATFAPLVKPFIAKLLDTLEELQTKPWTPVRAAEETQSAAHDWVAFHHWLAEQPFTQPS
VRPATRLDNNPLISICVTHYERPHLVPQLLDSLLRQSYTNFEVILVDDGSTSPDAARGLD
NLASRYFSNSSLLPSGRPQWHFFRIPNSYLGAARNRAAQHARGTFLLFLDDDDVLKPHAL
STLVSVANRTGAAALSTWLDEFATDVNPLEPREDGRELPHRRTYWFLGQELGAGLMSNAY
GSGNIFVHRRAWDRLSSSAHGGANETDTGAKGAFSTYREVGGEDWEFWSRLALEEAKEVA
EGREGEMKHFVVPEELIFVRSDPARASMKFSMDPWDAHFHATAPILNDPRIQDLNLAHSI
MLLKGVVTREYVEPAFTDSRENFQVAQGWGGWFYSFETLPPLGMEESLDWAPSLADSTLA
IAEGGIWLMDGSFASKPYIDDVFQQGWVNTRGERIAAIRTFKAPKPLEVAIDANYRSHHT
CGDGTRLSLIFVAGPGELPQVLVEWSTMDEGFGEHVSAIALRRGSTLSVVSDPLQSSDCD
RVEVHVKLTPVSLENQSWSALARRMSGSEDAKEEASRTEEAQPANSTGWSVAEDKGPSDD
EIFNIALIFDRNRFPHAKSVIRSIRHFTTSRRLVFHLIAPYQLHEELHEFFADTDMSLRV
YDHSLCSFVARQVLPFSNPDIHISAHCKMFLSEIVTFADRILYLDTDVTVTSDLAACYDK
PLANPGALVSMAVDMGDACQREPDACWPIGLHWRLPEGLVCGNVPARATLDRSPPTVCAE
AGELETLQVNGGVALFELAKMKESGFLQRYILSVVHHYRIMKSTPSVWGEQDFINSYFRL
FPEDLEVLPCGCNYQWFGARREVKCGLQPVTIAHHWSHGIAARTDNPYNVLFHHFLDDVE
GAPLPPVPELSASLPGAPNSSAIAIEHTLNCPRQSHDCTKPYAPSEHGRPVLVLSRVLSE
TFAADLVDTLEAQTYPKISHAVALRQGTVELPPLSFKRELFEISADPAAAYDALCEACGD
LAEPGQSCSTAPSDRIRRKAYFDCVCALSDPLADSMHDLEAFAKQQDPSWLLYLDDTQTF
ASANSLSQLMAEVDSPDELILFRINTTSAEQERTYHSKALPRSPLSGVGMLFHSSHLDRS
DWSGATRCGKWATFNRLSRRLRLKWIDLVPIIEHPLQRHLPITPAADFKVSIVILETQGK
VSWTPLLLETLQLVELAPLISEILVASVDTEDGAYGPEVQVVNPSIGSGLSELAALVASE
HVLLLSDSVAIDKTALTALINFHLDSPARLVGFFTETSGDDDFSPPLPNTPETFDIFDEP
DALVGQSSWTHILPRTLLTSRSNLEELSTLLDSQSDDYHLHPVCHPVLLSALSVRATSGQ
APLRVLPPEKSVVDRVHDCRIRSWAEVDYGRTAGDWALPKRAGEEGEEASLALAPTDEVP
TSESDDVQESEPKLERRDVQESSTDDLGISEEDFPVPPTLAECIDAINSLLGSSEWTKTG
NEVGLSGPQGLKVGVVPAVEVSKEMWEGARREERCYKA