Protein Info for mRNA_5069 in Rhodosporidium toruloides IFO0880

Name: 13437
Annotation: KOG2317 Putative translation initiation inhibitor UK114/IBM1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 transmembrane" amino acids 59 to 79 (21 residues), see Phobius details PF01042: Ribonuc_L-PSP" amino acids 16 to 124 (109 residues), 83.5 bits, see alignment E=6.2e-28

Best Hits

Swiss-Prot: 41% identical to RIDA_HUMAN: 2-iminobutanoate/2-iminopropanoate deaminase (RIDA) from Homo sapiens

KEGG orthology group: None (inferred from 40% identity to cne:CNB00590)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>mRNA_5069 KOG2317 Putative translation initiation inhibitor UK114/IBM1 (Rhodosporidium toruloides IFO0880)
MPAITGGPGVPKAAPFLSPAVLDDNSNTLYLSGQCGVDLEGNFIDGTVADRTKQTMRNIA
AVLTAAGMVVSTTIYLSAYTKDFETMNKAYVESFPRGMALPARTCIGVAALPKGTDVKIT
CIAVKKQKSKL