Protein Info for mRNA_5073 in Rhodosporidium toruloides IFO0880

Name: 13441
Annotation: K12843 PRPF3, PRP3 U4/U6 small nuclear ribonucleoprotein PRP3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 642 PF08572: PRP3" amino acids 242 to 460 (219 residues), 229.1 bits, see alignment E=6e-72 PF06544: DUF1115" amino acids 485 to 631 (147 residues), 122.2 bits, see alignment E=2e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (642 amino acids)

>mRNA_5073 K12843 PRPF3, PRP3 U4/U6 small nuclear ribonucleoprotein PRP3 (Rhodosporidium toruloides IFO0880)
MSDRKRANVFGDDDPISPHDAKKPRGNAPAAPSFVPTPIPSTLPPRPAAAPPAGGPPIDI
AAKRAEILAKLAKMKGANGGGLGAPPASASSSSAPPPAPPSAGLPQRSTPNLPSAPPQQP
GLDPDIARKIAEAKKRVAEMAAKSQAQAQAKANPYLSATFQGKKKEPAIDASVAAKGGLA
VTAHPLLLDNSVPAPTTKKDRYKPMAPKFSTTKANVSTPSPRPATPVPSTSDVPAESLTA
TPFFDPRLGYGSAGVTGKSHMGKGHARQGLHFRQAGTYIKKGEAMRAEARMDELKQRILE
SSQKAGVQSDLEETAKKVRRPPPPDIEWWDEGYVPEKTYESYSTRFLDESPLISHLVQHP
ISIPAPQDKNKVELKPLFLTKKEMKKMRRIRRQAELKDKQDRQKMGLLPPDPPKVKISNM
MRVLTQEAISDPTKVEAQVRREIVARERKHLKDNAERKLTAEERAEKREGQFAQDEAKGI
QAVAFKVRYLTDPSHKFKVKKNAIDWHLTGRILHNPKFCLVVVEGGAKSIKKYRQLMLNR
IRWTEEAAPRAGGEDDAPKLEDHGGILRPAGPFTAPDEPEEPQSLADNYCREVWSGAHRE
RVWADMARKNCPSESSAREVLGKLAQLWDIAKVEEKVDEFDI