Protein Info for mRNA_5081 in Rhodosporidium toruloides IFO0880

Name: 13449
Annotation: K10396 KIF5 kinesin family member 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 951 PF16796: Microtub_bd" amino acids 6 to 156 (151 residues), 93.9 bits, see alignment E=9.8e-31 PF00225: Kinesin" amino acids 12 to 336 (325 residues), 376.5 bits, see alignment E=1e-116

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (951 amino acids)

>mRNA_5081 K10396 KIF5 kinesin family member 5 (Rhodosporidium toruloides IFO0880)
MSASNNIKVVCRFRPPNKIELANNGGGSIVQIDEEGTTVKLQSQEAMKGPDAQGFTFDRV
FQMDTKQEEVFEYGVKGIVDDVMNGYNGTVFAYGQTGSGKSHTMMGPDIDNPEMKGIIPR
ITEQIFASIIASPANIEYLVKVSYMEIYMEKIRDLLQPENDNLPVHEDKQRGVYVKNLSE
FYVGNSAEVYEVMRQGGSARAVSATNMNAESSRSHSIFVITIQARNTETGTQKTGSLYLV
DLAGSEKIGKTGATGQTLEEAKKINKSLSALGMVINALTDGKSSHIPYRDSKLTRILQES
LGGNSRTTLIINCSPSPYNETETLSTLRFGMRAKSIKNKARVNAELSPAELKALLKKAQR
DYSNAGAYIGLLEQEVNVWREGGKVEKEQWASMEKALGLGEGELEKLVGGPAKSPTPGSA
PGRTTPRPPALDRVSEGDVSRPDTPMSGSLGADEREDLLRRQNEMEDQLAKTESQLSSQE
KIIRDLREELSSMKESESSALSESKAMSGEVADLRLQLERLRYDSKEAAITSDSLKEQNA
ELERELEELRKTLADAKTSQKSAEQEGKDKKKAERMAAMMAGFSAGGLSERESEIRASLA
RLDDAVNSDKPLSPDDIATLRRQLEDTTVSLREQQDKSKQVHEENDLLTRRRDELEQRLG
TLEQEYEELLDKTVADEERANADHVQDIRNKLEAQYAMKLDAALNDANDLKQQIELKSQE
VKSVNAKLEQARAANLELERAFKITTASIEGGKNLEEAAKDLERQHKAVAQQLADFDAMK
KSLMRDLQDRCEKVVELEISLDEARENYRNLAKNSNSKAQQRKMDFLTRNLDQLTVVQKQ
LVDQNTILKRDVALAERKLIARNERIQNLEALLQDANDKLNQQNAKFEARLQAVRERLDQ
ARAQNQPAIASSLNFGRIAKPLRGGGAEAESNPSQDRRTSGFFSRFGSAAR