Protein Info for mRNA_5082 in Rhodosporidium toruloides IFO0880

Name: 13450
Annotation: K10696 BRE1 E3 ubiquitin-protein ligase BRE1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 879 PF08647: BRE1" amino acids 623 to 717 (95 residues), 83.1 bits, see alignment E=6.2e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (879 amino acids)

>mRNA_5082 K10696 BRE1 E3 ubiquitin-protein ligase BRE1 (Rhodosporidium toruloides IFO0880)
MNGSSLPPSRPSSADPHQQRKRVTLVDPPSPHPSKKARLDSDAPAKDEEEDEMDEAARKL
DSFRKEAIFREMLSYKRQLSRALSDADSLRSQRTAYEVRLSRVESAWQALVAEADLILPS
TSSSTSGGSADSASSPPLTSASLADEELDEALSHRSAATKSLLSRLQSLHPSSASPAASD
LEEKCRALHAESLQSREALRILRTAHEETVSQLEETHAALVRAERKFDRYQSATVAALEG
RADPKLAAAAGPSGVKAGSATPQPASGGQSPLVNGLKREPSTAGAEGTGDPPPSTGVVTG
QTEAEAAAVKEEMDELRGLVERRAKELEELRSERVQLKLEIDVLKGQRVNLPDDVVAEQA
TFKLMQQHVQYLSGLFETKQSEAKRATEEAEQLREGMESFRETVFRDASEQVTELQNRLT
SHESDLSRLRASRDELRAETAELRAKETGNSHSLDELRKLAEARKVRLQAYASELRRIRL
GKAAERGDVENVDVRLKQAEAAEDEEFEEGEVQVGEDEVVTDLSNRLKKAEGLLLALRDQ
LHSYAGSAGGLSAPSARDLVDSETRARADLADAHNRVMKLEAILGPGGRADVREMAEKLE
EKTHELKVAQAQVKSQEAAANMLYGEIDRLSTAWATLDEQNASKVFNLAALEEKLQRLSA
EKAKSDNYYFASMRQVDALKNENAVLNKLAEKQQQKVEAAAELHRSIAQQLAAAEKEITV
QQSNVRAHQDAILLLKRENTELLLRSEQETKQVAELNKLLAERVQQAENEAAAHKRAEEQ
LDKLQRQLQQAQAKASSAAAAASGVSDPADIRDLKKYNADLTHMLKCSSCNVRFKNTCIT
RCGHMFCRECVDARINTRQRKCGNCANPFSKDDILSVFF