Protein Info for mRNA_5092 in Rhodosporidium toruloides IFO0880

Name: 13460
Annotation: HMMPfam-RTA1 like protein-PF04479

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 136 to 162 (27 residues), see Phobius details amino acids 182 to 206 (25 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details PF04479: RTA1" amino acids 66 to 279 (214 residues), 119 bits, see alignment E=1.2e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>mRNA_5092 HMMPfam-RTA1 like protein-PF04479 (Rhodosporidium toruloides IFO0880)
MSSFPPGVPINPNPNPPDGEAGISIYGYIPSRALATIAVVTFGLAFINHAVHLVRLRGTR
TFQSLMMFGNIMEIVGYSCRLVSHYHPFVVDYFVVQYFFIVCSPVFFQAAFYLALGLALR
RLDHFGSTLLGFNPKILISVMIASDVVTTIIQITGAALIGVAESNQYQGNKVSITSSQAN
DILLAGLAIQMASFFAFLCLLVFVIVRSERTFTAAHLPRRFSAFLFTASLLVFLRTTFRL
AETAQGVFGFASRSEALFGTLEYLPVILAVGIYAAVPLAELLPVDVDDDRYEDSSDARTL
SMRQATKETRTLDLRGASTRGSDAGRNGNGGMSDEEKDEEERNLERGSEVSPSPPASSSS
GGGRRADELRETYEDEGVVTDESPTTMVERGSLRSRRGSGFERTGSYGAKDE